Factsheet for Zm00001d046048_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d036620_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Zm00001d036620_P001	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049254_P001	Maize	cytosol	81.91	80.63
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	48.4	36.4
Zm00001d035226_P001	Maize	plasma membrane	60.11	32.47
Zm00001d024138_P001	Maize	plastid	42.02	28.01
Zm00001d035797_P001	Maize	mitochondrion	78.72	25.96
Zm00001d050438_P002	Maize	extracellular	43.09	25.16
Zm00001d049075_P001	Maize	extracellular, golgi	62.77	24.38
GSMUA_Achr7P05930_001	Banana	nucleus	42.55	13.18
Zm00001d021196_P004	Maize	nucleus	46.28	12.31
Zm00001d006160_P001	Maize	nucleus	45.74	12.22
HORVU5Hr1G080170.2	Barley	nucleus	41.49	12.04
EER97062	Sorghum	nucleus	45.21	11.96
TraesCS5A01G308900.1	Wheat	nucleus	42.02	11.3
TraesCS5B01G309500.1	Wheat	nucleus	42.02	11.29
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	42.02	11.29
Os09t0520700-01	Rice	nucleus, plastid	41.49	11.21
PGSC0003DMT400079640	Potato	nucleus	35.64	9.94
GSMUA_Achr4P19590_001	Banana	nucleus	37.77	9.86
Solyc03g007010.2.1	Tomato	nucleus	35.64	9.82
VIT_16s0022g02110.t01	Wine grape	plastid	36.17	9.8
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	34.57	9.72
KRG91400	Soybean	nucleus	33.51	9.09
KRH35418	Soybean	endoplasmic reticulum	33.51	9.04
Bra029275.1-P	Field mustard	nucleus	31.38	8.95
AT5G62190.1	Thale cress	nucleus	31.91	8.94
CDX87236	Canola	nucleus	23.94	7.06
CDY34116	Canola	cytosol	19.15	7.06
CDY16789	Canola	nucleus	23.4	6.93
Bra035903.1-P	Field mustard	nucleus	22.34	6.64
CDY28363	Canola	plastid	9.57	6.57
Zm00001d012922_P003	Maize	plastid	19.15	4.83
Zm00001d034721_P002	Maize	plastid	18.62	4.62
CDY44622	Canola	cytosol	17.55	3.82
Zm00001d031050_P002	Maize	mitochondrion	6.91	2.13
Zm00001d041480_P001	Maize	mitochondrion	5.85	1.84
Zm00001d031584_P001	Maize	cytosol	1.6	1.46
Zm00001d043739_P001	Maize	mitochondrion	1.6	1.44
Zm00001d018787_P001	Maize	mitochondrion	3.72	1.15
Zm00001d018375_P001	Maize	nucleus	2.13	0.76
Solyc06g035450.2.1	Tomato	nucleus	1.6	0.75
Zm00001d048578_P001	Maize	cytosol	0.53	0.43
Zm00001d008884_P001	Maize	cytosol	0.0	0.0
Zm00001d052036_P001	Maize	plastid	0.0	0.0
Zm00001d033226_P001	Maize	cytosol	0.0	0.0
Zm00001d032793_P001	Maize	cytosol	0.0	0.0
Zm00001d030797_P001	Maize	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	UniProt:A0A1D6P0S0	ProteinID:AQL03680.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0003824	GO:GO:0004386	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	PFAM:PF00467
PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	SMART:SM00739	UniParc:UPI0008449563
EnsemblPlantsGene:Zm00001d046048	EnsemblPlants:Zm00001d046048_P001	EnsemblPlants:Zm00001d046048_T001	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 7

Coordinates

chr9:-:59660462..59662418

Molecular Weight (calculated)

20854.0 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.028

Length

188 amino acids

Sequence
(BLAST)

001: MESRYKHSVS RLERESGVKF EHISTPQPTD VAQSAGSEAA DATASVSDSV IPIFRQQAEQ LLSSSSLSAA DLLAKALAKA VLELTEICVL GLHGHKEKII
101: VIFLGGLQYT TSSNWQTDVV TWVCYNILEI VFLHRRFDVG NVVMVTGGRN TGRVGAIKNR EKHKGIFEEN IEWNSNLVVA KVWRLEFI

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.