Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 3
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d036620_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62190.1 | Zm00001d036620_P001 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024138_P001 | Maize | plastid | 44.41 | 50.71 |
| Zm00001d046048_P001 | Maize | cytosol | 25.16 | 43.09 |
| Zm00001d049254_P001 | Maize | cytosol | 25.16 | 42.41 |
| Zm00001d035226_P001 | Maize | plasma membrane | 40.99 | 37.93 |
| Zm00001d015590_P001 | Maize | endoplasmic reticulum, golgi | 28.57 | 36.8 |
| Zm00001d049075_P001 | Maize | extracellular, golgi | 43.17 | 28.72 |
| Zm00001d035797_P001 | Maize | mitochondrion | 41.3 | 23.33 |
| Zm00001d021196_P004 | Maize | nucleus | 47.83 | 21.78 |
| Zm00001d006160_P001 | Maize | nucleus | 46.89 | 21.45 |
| HORVU5Hr1G080170.2 | Barley | nucleus | 42.86 | 21.3 |
| GSMUA_Achr7P05930_001 | Banana | nucleus | 40.06 | 21.25 |
| EER97062 | Sorghum | nucleus | 46.58 | 21.1 |
| CDY28363 | Canola | plastid | 17.7 | 20.8 |
| TraesCS5A01G308900.1 | Wheat | nucleus | 44.1 | 20.31 |
| TraesCS5B01G309500.1 | Wheat | nucleus | 44.1 | 20.29 |
| TraesCS5D01G315900.1 | Wheat | mitochondrion, nucleus | 44.1 | 20.29 |
| Os09t0520700-01 | Rice | nucleus, plastid | 41.61 | 19.25 |
| Zm00001d008884_P001 | Maize | cytosol | 9.01 | 16.86 |
| GSMUA_Achr4P19590_001 | Banana | nucleus | 37.58 | 16.81 |
| AT5G62190.1 | Thale cress | nucleus | 34.47 | 16.54 |
| Bra029275.1-P | Field mustard | nucleus | 33.54 | 16.39 |
| PGSC0003DMT400079640 | Potato | nucleus | 34.16 | 16.32 |
| PGSC0003DMT400071859 | Potato | cytosol, nucleus, plastid | 33.85 | 16.29 |
| VIT_16s0022g02110.t01 | Wine grape | plastid | 35.09 | 16.28 |
| Solyc03g007010.2.1 | Tomato | nucleus | 34.47 | 16.28 |
| KRG91400 | Soybean | nucleus | 34.47 | 16.02 |
| KRH35418 | Soybean | endoplasmic reticulum | 34.47 | 15.93 |
| CDX87236 | Canola | nucleus | 31.37 | 15.86 |
| CDY16789 | Canola | nucleus | 30.75 | 15.59 |
| Bra035903.1-P | Field mustard | nucleus | 29.81 | 15.17 |
| Zm00001d030797_P001 | Maize | mitochondrion | 8.7 | 13.46 |
| Zm00001d048578_P001 | Maize | cytosol | 9.32 | 12.82 |
| CDY34116 | Canola | cytosol | 19.57 | 12.35 |
| Zm00001d012922_P003 | Maize | plastid | 25.16 | 10.87 |
| Zm00001d034721_P002 | Maize | plastid | 24.84 | 10.55 |
| Solyc06g035450.2.1 | Tomato | nucleus | 12.73 | 10.22 |
| Zm00001d031050_P002 | Maize | mitochondrion | 19.25 | 10.15 |
| Zm00001d041480_P001 | Maize | mitochondrion | 18.32 | 9.85 |
| Zm00001d018787_P001 | Maize | mitochondrion | 16.46 | 8.7 |
| Zm00001d018375_P001 | Maize | nucleus | 11.18 | 6.88 |
| CDY44622 | Canola | cytosol | 17.7 | 6.6 |
| Zm00001d033226_P001 | Maize | cytosol | 2.48 | 6.4 |
| Zm00001d031584_P001 | Maize | cytosol | 3.73 | 5.83 |
| Zm00001d043739_P001 | Maize | mitochondrion | 3.73 | 5.77 |
| Zm00001d052036_P001 | Maize | plastid | 3.42 | 5.24 |
| Zm00001d032793_P001 | Maize | cytosol | 0.93 | 4.76 |
Protein Annotations
| EnsemblPlants:Zm00001d050438_P002 | EnsemblPlants:Zm00001d050438_T002 | EnsemblPlantsGene:Zm00001d050438 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0016787 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF327 | ProteinID:AQK52529.1 | SEG:seg | UniParc:UPI0008451698 |
| UniProt:A0A1D6Q1N8 | MapMan:35.1 | : | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 7
Coordinates
chr4:-:88137812..88141962
Molecular Weight (calculated)
35308.0 Da
IEP (calculated)
8.916
GRAVY (calculated)
0.109
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MLWDILNSTY AFKAILKSHF KLLQKGSGCC SRIADCLCCM CCIRNNTVYD MFLCLSVEVA WRLPSFYTHH FCGIRDGQLS IPVTKRAESR SASTQGLGNA
101: VSPSWNPSEI VGKKIKQVLG KVEDATKVQT LLFSATLPDW VNKLSMRFLK VDRKTVDLVG NEKLKASASV KHLALPCNKA ARAQVIPDII RCNTGVAVML
201: YEPRYKHSVS RLEWESGVKF EHISVPQPTD VAQSAGSEAA DAIASVSDSV IPIFRQQAEQ LLSSSSLSAA DLLAKALAKA VVKICVLGLH GLKEKIIVIF
301: LGGLQYTTSS NWQTDVVTWV SD
101: VSPSWNPSEI VGKKIKQVLG KVEDATKVQT LLFSATLPDW VNKLSMRFLK VDRKTVDLVG NEKLKASASV KHLALPCNKA ARAQVIPDII RCNTGVAVML
201: YEPRYKHSVS RLEWESGVKF EHISVPQPTD VAQSAGSEAA DAIASVSDSV IPIFRQQAEQ LLSSSSLSAA DLLAKALAKA VVKICVLGLH GLKEKIIVIF
301: LGGLQYTTSS NWQTDVVTWV SD
001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y
Arabidopsis Description
RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.