Factsheet for VIT_16s0022g02110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007010.2.1	Tomato	nucleus	69.6	70.82
PGSC0003DMT400079640	Potato	nucleus	68.44	70.47
KRG91400	Soybean	nucleus	69.88	69.99
VIT_08s0007g03740.t01	Wine grape	extracellular	7.64	69.74
GSMUA_Achr7P05930_001	Banana	nucleus	60.81	69.52
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	67.0	69.51
CDY16789	Canola	nucleus	62.68	68.5
CDX87236	Canola	nucleus	62.82	68.45
Bra035903.1-P	Field mustard	nucleus	62.25	68.25
Solyc06g035450.2.1	Tomato	nucleus	39.34	68.08
KRH35418	Soybean	endoplasmic reticulum	68.3	68.01
Bra029275.1-P	Field mustard	nucleus	63.26	66.62
AT5G62190.1	Thale cress	nucleus	62.97	65.13
HORVU5Hr1G080170.2	Barley	nucleus	59.37	63.58
CDY28363	Canola	plastid	24.93	63.14
GSMUA_Achr4P19590_001	Banana	nucleus	64.7	62.36
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	22.19	61.6
Os09t0520700-01	Rice	nucleus, plastid	61.1	60.92
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	61.38	60.86
TraesCS5B01G309500.1	Wheat	nucleus	61.24	60.71
TraesCS5A01G308900.1	Wheat	nucleus	60.81	60.37
Zm00001d006160_P001	Maize	nucleus	60.23	59.38
Zm00001d021196_P004	Maize	nucleus	60.23	59.12
EER97062	Sorghum	nucleus	60.09	58.65
Zm00001d035226_P001	Maize	plasma membrane	19.74	39.37
Zm00001d049075_P001	Maize	extracellular, golgi	25.65	36.78
Zm00001d035797_P001	Maize	mitochondrion	29.83	36.32
Zm00001d046048_P001	Maize	cytosol	9.8	36.17
Zm00001d049254_P001	Maize	cytosol	9.8	35.6
Zm00001d050438_P002	Maize	extracellular	16.28	35.09
CDY34116	Canola	cytosol	24.78	33.73
Zm00001d024138_P001	Maize	plastid	13.4	32.98
VIT_14s0060g00060.t01	Wine grape	plastid	33.57	30.5
VIT_12s0142g00670.t01	Wine grape	plastid	26.8	27.93
VIT_10s0003g04000.t01	Wine grape	nucleus	16.57	22.29
CDY44622	Canola	cytosol	25.5	20.49

Protein Annotations

EntrezGene:100258263	wikigene:100258263	Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB49247
ProteinID:CCB49247.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HAJ0	EMBL:FN595506	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100258263	wikigene:LOC100258263	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI0002108440	ArrayExpress:VIT_16s0022g02110	EnsemblPlantsGene:VIT_16s0022g02110
EnsemblPlants:VIT_16s0022g02110.t01	RefSeq:XP_002269873	RefSeq:XP_002269873.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:+:14556545..14564194

Molecular Weight (calculated)

74852.7 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.305

Length

694 amino acids

Sequence
(BLAST)

001: MPSLSLADPV SVSKDKKEKK LKVKTLETEA SMIKKESKSK RVKSDPEISG SDSEDLKKKK TKKKEKRKAS EIDDDNEDQM SETSSELGEP VNSSLKAKKK
101: KLKVPEMEEE EGKAEENPNA LSNFRISEPL REKLKSKGIE ALFPIQAMTF DTILDGSDLV GRARTGQGKT LAFVLPILES LINGPNRGSR KTGYGRPPCV
201: LVLLPTRELA TQVYADFDVY GGAIGLTSCC LYGGAPYQAQ EIKLKRGVDI VVGTPGRIKD HIERGNIDFS SLKFRVLDEA DEMLRMGFVE DVELILGKVE
301: DVSKVQTLLF SATLPGWVKE ISSRFLKPTL KTADLVGNEK MKASTNVRHI VLPCSSSARS QVIPDVIRCY SSGGRTIIFT ETKDSASELA GLLPGARALH
401: GDIQQSQREV TLSGFRSGKF MTLVATNVAA RGLDINDVQL IIQCEPPRDV EAYIHRSGRT GRAGNSGVAV MLFDPRRSNI SKIERESGVK FEHVSAPQPA
501: DIAKSAGVEA AGTITQVSDS VIPAFKSAAE ELLNTSGLSA VELLAKALAK ASGYTEIKSR SLLASLDNHV TVLLEAGKPI YTPSFAYGVL RRFLPEDKVD
601: SIKGLALTAD GNGAVFDVAT EDLDAFLAGQ ENAANVSLEV LKALPRLQER DQSRGGRFGG GGRGEEMIDF LVAPTVGGAA ATNGEGLVNL RQNG

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.