Factsheet for GSMUA_Achr7P05930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	GSMUA_Achr10P...	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19590_001	Banana	nucleus	88.47	74.58
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	29.0	70.4
HORVU5Hr1G080170.2	Barley	nucleus	71.66	67.13
Zm00001d006160_P001	Maize	nucleus	74.3	64.06
Os09t0520700-01	Rice	nucleus, plastid	73.15	63.79
EER97062	Sorghum	nucleus	74.46	63.57
Zm00001d021196_P004	Maize	nucleus	73.31	62.94
PGSC0003DMT400079640	Potato	nucleus	69.03	62.17
TraesCS5A01G308900.1	Wheat	nucleus	71.17	61.8
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	71.17	61.71
TraesCS5B01G309500.1	Wheat	nucleus	71.17	61.71
Solyc03g007010.2.1	Tomato	nucleus	69.19	61.58
CDY28363	Canola	plastid	27.68	61.31
KRG91400	Soybean	nucleus	69.52	60.89
VIT_16s0022g02110.t01	Wine grape	plastid	69.52	60.81
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	66.72	60.54
KRH35418	Soybean	endoplasmic reticulum	68.86	59.97
CDX87236	Canola	nucleus	62.6	59.65
CDY16789	Canola	nucleus	62.11	59.37
Bra035903.1-P	Field mustard	nucleus	61.61	59.08
Bra029275.1-P	Field mustard	nucleus	63.59	58.57
AT5G62190.1	Thale cress	nucleus	64.58	58.42
Solyc06g035450.2.1	Tomato	nucleus	38.22	57.86
Zm00001d035226_P001	Maize	plasma membrane	25.86	45.11
Zm00001d049254_P001	Maize	cytosol	13.51	42.93
Zm00001d046048_P001	Maize	cytosol	13.18	42.55
Zm00001d049075_P001	Maize	extracellular, golgi	33.11	41.53
Zm00001d035797_P001	Maize	mitochondrion	37.89	40.35
Zm00001d050438_P002	Maize	extracellular	21.25	40.06
Zm00001d024138_P001	Maize	plastid	17.79	38.3
GSMUA_Achr2P01980_001	Banana	nucleus	39.37	34.34
CDY34116	Canola	cytosol	26.03	30.98
GSMUA_Achr11P...	Banana	plastid	38.88	30.49
GSMUA_Achr7P00980_001	Banana	mitochondrion	23.89	27.99
GSMUA_Achr2P13080_001	Banana	plastid	31.14	25.61
GSMUA_Achr10P...	Banana	cytosol	19.44	23.05
CDY44622	Canola	cytosol	27.35	19.21
GSMUA_Achr2P13070_001	Banana	cytosol	31.47	16.16

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G05930_001
EnsemblPlants:GSMUA_Achr7P05930_001	EnsemblPlants:GSMUA_Achr7T05930_001	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TF33	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF327	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI0002958D52	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 7 [Source:GMGC_GENE;Acc:GSMUA_Achr7G05930_001]

Coordinates

chr7:-:4396617..4401862

Molecular Weight (calculated)

65615.4 Da

IEP (calculated)

9.365

GRAVY (calculated)

-0.233

Length

607 amino acids

Sequence
(BLAST)

001: MKDDDGETDN AADDPNALSN FRISKVLRET LNSKGIKALF PIQAMTFDLI LDGFDLVGRA RTGQGKTLAF VLPILESLTN GVHKASRKSG YGRPPSVLVL
101: LPTRELANQV YSDFEVYGGT VGLSSCCLYG GSPYRTQEIS LRRGVDIIVG TPGRIKDHIE RGNLDLKALK FRVLDEADEM LNMGFVDDVE LILGKVEDTS
201: KVQTLLFSAT LPDWVKKIST RFLKQDKKTA DLVGNEKLKA SANVRHLVLP CTRSARPQLI PDIIRCYSRG GRTIIFTETK ESASELAGLL PGARALHGDI
301: MQAQREVILA GFRSGRFLVL VATNVAARGL DINDVQLIIQ CEPPHDVEAY IHRSGRTGRA GNTGVAILLY EPKHSFSVSR IERESGVKFE HISAPQPADI
401: AESAGSEAAD AISNVSDSVI PIFRSQAEQL LSSSELSAVD LLAKALAKAV GFTDIKKRSL LSSMENYVTL LLQTGKIIYS PSFAFSTFRR FLPDEKIEGV
501: KGLSLTADGT GAVFDVPADD VNAFLEGQEN AQSVSIEVLE KLPPLQDTDR SKGGNSGRGR FGGGRFSGGR GGNSSSNRRN GGGGFIGGGR GRRKASSGGP
601: NRFNRWK

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.