Factsheet for Zm00001d015590_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d036620_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Zm00001d036620_P001	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049254_P001	Maize	cytosol	37.6	49.21
Zm00001d046048_P001	Maize	cytosol	36.4	48.4
Zm00001d035797_P001	Maize	mitochondrion	91.6	40.18
Zm00001d035226_P001	Maize	plasma membrane	52.8	37.93
Zm00001d008884_P001	Maize	cytosol	26.0	37.79
Zm00001d049075_P001	Maize	extracellular, golgi	70.0	36.16
Zm00001d033226_P001	Maize	cytosol	17.6	35.2
Zm00001d030797_P001	Maize	mitochondrion	26.4	31.73
Zm00001d021196_P004	Maize	nucleus	82.8	29.28
Zm00001d006160_P001	Maize	nucleus	82.4	29.26
GSMUA_Achr7P05930_001	Banana	nucleus	70.4	29.0
EER97062	Sorghum	nucleus	82.0	28.83
Zm00001d024138_P001	Maize	plastid	32.4	28.72
Zm00001d050438_P002	Maize	extracellular	36.8	28.57
Zm00001d032793_P001	Maize	cytosol	7.2	28.57
HORVU5Hr1G080170.2	Barley	nucleus	74.0	28.55
Zm00001d048578_P001	Maize	cytosol	26.4	28.21
TraesCS5A01G308900.1	Wheat	nucleus	74.0	26.47
TraesCS5B01G309500.1	Wheat	nucleus	74.0	26.43
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	74.0	26.43
Os09t0520700-01	Rice	nucleus, plastid	72.8	26.15
CDY28363	Canola	plastid	26.0	23.72
GSMUA_Achr4P19590_001	Banana	nucleus	66.8	23.19
Solyc06g035450.2.1	Tomato	nucleus	37.2	23.19
PGSC0003DMT400079640	Potato	nucleus	62.0	23.0
KRH35418	Soybean	endoplasmic reticulum	63.2	22.67
Solyc03g007010.2.1	Tomato	nucleus	61.6	22.58
KRG91400	Soybean	nucleus	62.4	22.51
VIT_16s0022g02110.t01	Wine grape	plastid	61.6	22.19
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	58.8	21.97
CDY16789	Canola	nucleus	55.6	21.89
Bra035903.1-P	Field mustard	nucleus	55.2	21.8
CDX87236	Canola	nucleus	55.2	21.66
AT5G62190.1	Thale cress	nucleus	57.2	21.31
Bra029275.1-P	Field mustard	nucleus	56.0	21.24
Zm00001d043739_P001	Maize	mitochondrion	16.8	20.19
Zm00001d031584_P001	Maize	cytosol	16.4	19.9
Zm00001d012922_P003	Maize	plastid	38.4	12.89
Zm00001d034721_P002	Maize	plastid	38.4	12.66
Zm00001d041480_P001	Maize	mitochondrion	29.6	12.35
Zm00001d031050_P002	Maize	mitochondrion	30.0	12.28
Zm00001d018787_P001	Maize	mitochondrion	28.8	11.82
CDY34116	Canola	cytosol	19.6	9.61
Zm00001d052036_P001	Maize	plastid	8.0	9.52
Zm00001d018375_P001	Maize	nucleus	19.2	9.18
CDY44622	Canola	cytosol	18.0	5.21

Protein Annotations

Gene3D:2.30.30.30	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6H2U1	ProteinID:AQK69154.1	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014722	InterPro:P-loop_NTPase
PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192	PANTHER:PTHR24031	PANTHER:PTHR24031:SF327	InterPro:RNA-helicase_DEAD-box_CS
InterPro:Rib_L2_dom2	SMART:SM00487	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI000844CF43	EnsemblPlantsGene:Zm00001d015590
EnsemblPlants:Zm00001d015590_P001	EnsemblPlants:Zm00001d015590_T001	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 7

Coordinates

chr5:-:100034690..100036363

Molecular Weight (calculated)

27286.2 Da

IEP (calculated)

6.783

GRAVY (calculated)

0.158

Length

250 amino acids

Sequence
(BLAST)

001: MATRQLLRLL MAQLIWRTPS VLVLLPTREL ANQVHADFEF YGATFGLSAC CVYGGSPYRP QEMALRRGVD IVVGTPGRVK DFIVKATLNL KCLKFRVLDE
101: ADEMLNMGFV DDVELILGKV EDATKVQTLL FSATLPDWVN KLSLRFLKVD TESGVKFEHV SAPQPTDVAQ SAGSEAADAI ASVSDSVIPI FRQQAEQLLS
201: SSSLSGADLL AKALAKAVFD VGNMVMVTGG RNIGRVGVIK NWEKHKGIFE

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.