Factsheet for Zm00001d018375_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07679	Sorghum	nucleus	94.84	95.57
Os02t0795900-01	Rice	nucleus	85.66	85.99
GSMUA_Achr10P...	Banana	cytosol	65.01	66.41
Solyc07g005890.2.1	Tomato	nucleus	61.76	62.96
PGSC0003DMT400059139	Potato	cytosol	61.57	62.77
VIT_10s0003g04000.t01	Wine grape	nucleus	59.46	60.27
AT4G15850.1	Thale cress	nucleus	54.49	54.6
CDY44172	Canola	cytosol	54.49	53.67
Bra033519.1-P	Field mustard	cytosol	54.3	53.48
CDY22890	Canola	cytosol	54.3	53.48
KRH42587	Soybean	nucleus	31.17	53.09
KRH15843	Soybean	cytosol	38.05	52.51
KRH15837	Soybean	nucleus	17.59	49.2
Zm00001d052036_P001	Maize	plastid	19.5	48.57
KRH15846	Soybean	nucleus	44.36	41.58
KRH44787	Soybean	nucleus	47.99	40.68
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	57.36	39.06
Zm00001d008884_P001	Maize	cytosol	9.56	29.07
Zm00001d030797_P001	Maize	mitochondrion	10.52	26.44
Zm00001d048578_P001	Maize	cytosol	10.9	24.36
Zm00001d032793_P001	Maize	cytosol	2.87	23.81
Zm00001d033226_P001	Maize	cytosol	5.54	23.2
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	9.18	19.2
Zm00001d041480_P001	Maize	mitochondrion	21.22	18.53
Zm00001d018787_P001	Maize	mitochondrion	21.22	18.23
Zm00001d031050_P002	Maize	mitochondrion	21.22	18.17
Zm00001d034721_P002	Maize	plastid	25.05	17.28
Zm00001d012922_P003	Maize	plastid	24.28	17.05
Zm00001d021196_P004	Maize	nucleus	21.03	15.56
Zm00001d006160_P001	Maize	nucleus	20.84	15.48
Zm00001d031584_P001	Maize	cytosol	5.93	15.05
Zm00001d043739_P001	Maize	mitochondrion	5.54	13.94
Zm00001d050438_P002	Maize	extracellular	6.88	11.18
Zm00001d035797_P001	Maize	mitochondrion	11.47	10.53
Zm00001d049075_P001	Maize	extracellular, golgi	7.65	8.26
Zm00001d024138_P001	Maize	plastid	4.02	7.45
Zm00001d035226_P001	Maize	plasma membrane	4.78	7.18
Zm00001d046048_P001	Maize	cytosol	0.76	2.13
Zm00001d049254_P001	Maize	cytosol	0.76	2.09

Protein Annotations

EntrezGene:103627856	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A096Q9L0	ProteinID:AQK75752.1	ProteinID:AQK75756.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000221E829	EnsemblPlantsGene:Zm00001d018375	EnsemblPlants:Zm00001d018375_P001	EnsemblPlants:Zm00001d018375_T001
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 1

Coordinates

chr5:-:219481691..219490003

Molecular Weight (calculated)

59102.9 Da

IEP (calculated)

9.604

GRAVY (calculated)

-0.317

Length

523 amino acids

Sequence
(BLAST)

001: MVAMARKDEE EGPADRVPHL PWMRYPVDID TFSGRPVTQL PRLDPRLVEA LQRMGIESFF PVQEAAWLET IGPGAFERDI CINSPTGSGK TLAYALPIVQ
101: MLCTRKVRCL RALVVLPTRD LALQVKEVFD AIAPVVGLSV GSAVGQSSIA DEVSSLVQKP RQEFYPTIDK EYVQMEPRTK IDILVATPGR LMDHINMTNG
201: FSLEHLQYLV IDETDRMLRE AYQSWLPTVI QLTHSIGQDH SCHDIDGKTL LHPLTTIRRS GVERGFKSKC YPRLAKIVLS ATLTQDPSKL SQLELHHPLL
301: LNSGKKRYRI PTKLESYKLI CKSNLKPLSL IVLLQELQGN KCLVFTSSVE SSHRLSTLLR FFENLPFKFS EYSRLQREST RRKTLEAFKE GKIDVLIGTD
401: RMARGIHIDG LRYVINYDMP PYVKTYIHRA GRTARAGESG SCFTFLRKHE VKTFDKMLKK ADNAGCNLHS LPEESIETLR PAFSGALRKL EGALESEAVK
501: KYDLGDKTPG ASKRKRPNQL CKQ

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.