Factsheet for Zm00001d034721_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012922_P003	Maize	plastid	92.61	94.23
KXG37219	Sorghum	plastid	93.54	92.32
Os03t0827700-01	Rice	nucleus	84.17	88.24
TraesCS4A01G367700.1	Wheat	nucleus	82.85	82.09
TraesCS5D01G505700.2	Wheat	plastid	82.85	81.45
TraesCS5B01G504900.1	Wheat	plastid	81.27	76.62
GSMUA_Achr2P01980_001	Banana	nucleus	67.41	73.42
VIT_14s0060g00060.t01	Wine grape	plastid	71.5	70.94
CDX80564	Canola	plastid	66.23	68.96
CDY05524	Canola	plastid	66.62	68.43
Bra020533.1-P	Field mustard	plastid	66.49	68.2
CDX87045	Canola	plastid	67.02	68.1
CDY66725	Canola	plastid	66.62	67.97
GSMUA_Achr11P...	Banana	plastid	69.39	67.96
Bra009900.1-P	Field mustard	plastid	66.62	67.51
Bra036582.1-P	Field mustard	plastid	66.09	67.43
CDY61108	Canola	plastid	66.62	67.33
AT5G26742.2	Thale cress	plastid	66.36	67.25
Solyc08g042050.2.1	Tomato	plastid	65.57	66.62
CDY19766	Canola	plastid	66.75	66.49
KRG90413	Soybean	plastid	64.51	66.44
KRG96641	Soybean	nucleus	67.02	65.89
KRH68372	Soybean	nucleus	67.02	65.89
KRH33703	Soybean	plastid	63.85	65.76
Zm00001d008884_P001	Maize	cytosol	13.85	61.05
Zm00001d030797_P001	Maize	mitochondrion	15.44	56.25
Zm00001d048578_P001	Maize	cytosol	15.57	50.43
Zm00001d031050_P002	Maize	mitochondrion	36.15	44.84
Zm00001d032793_P001	Maize	cytosol	3.69	44.44
Zm00001d041480_P001	Maize	mitochondrion	34.7	43.91
Zm00001d018787_P001	Maize	mitochondrion	34.43	42.86
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	12.66	38.4
Zm00001d033226_P001	Maize	cytosol	6.33	38.4
Zm00001d021196_P004	Maize	nucleus	31.93	34.23
Zm00001d006160_P001	Maize	nucleus	31.66	34.09
Zm00001d031584_P001	Maize	cytosol	8.58	31.55
Zm00001d043739_P001	Maize	mitochondrion	8.44	30.77
Zm00001d018375_P001	Maize	nucleus	17.28	25.05
Zm00001d050438_P002	Maize	extracellular	10.55	24.84
Zm00001d024138_P001	Maize	plastid	8.71	23.4
Zm00001d035797_P001	Maize	mitochondrion	16.75	22.28
Zm00001d035226_P001	Maize	plasma membrane	9.37	20.4
Zm00001d049075_P001	Maize	extracellular, golgi	12.4	19.42
Zm00001d049254_P001	Maize	cytosol	4.75	18.85
Zm00001d046048_P001	Maize	cytosol	4.62	18.62
Zm00001d052036_P001	Maize	plastid	4.35	15.71

Protein Annotations

EntrezGene:100191761	MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	UniProt:A0A1D6LAB8
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM11073.1
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI000844B802
EnsemblPlantsGene:Zm00001d034721	EnsemblPlants:Zm00001d034721_P002	EnsemblPlants:Zm00001d034721_T002	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

RNA helicase4 RNA helicase4

Coordinates

chr1:+:300730265..300737926

Molecular Weight (calculated)

81837.6 Da

IEP (calculated)

7.132

GRAVY (calculated)

-0.361

Length

758 amino acids

Sequence
(BLAST)

001: MASLTLPALA LALSNPGAVR LRAAAFRCWA LRRRGWAAAG ALASPNSVLS EHAFKRLQLG SDDEDGEGPY GSDADEGFEA GEGDNEELAI ARLGLPDELV
101: ATLEKRGITH LFPIQRAVLI PALEGRDLIA RAKTGTGKTL AFGIPMIKQL IEQDDGRITR RGRTPRVLVL APTRELAKQV EKEIKESAPK LGTVCVYGGV
201: SYNVQQNALS RGVDVVVGTP GRIIDLINGG SLQLGEVQYL VLDEADQMLA VGFEEDVETI LQQLPAGRQS MLFSATMPSW VKKLSRRYLN NPLTIDLVGD
301: QDEKLAEGIK LYAIPLTTTS KRTVLSDLIT VYAKGGKTIV FTRTKKDADE VSLALTNSIA SEALHGDISQ HQRERTLNGF RQGKFTVLVA TDVAARGLDI
401: PNVDLIIHYE LPNDPETFVH RSGRTGRAGK AGTAILMFTS SQKRTVKSLE RDVGCNFEFI SPPSIEEVLE SSAEHVIATL RGVHPESTKY FLGAAEKLTE
501: ELGPHALASA LAHLSGFSQP PSSRSLISHE QEGALRSFLS LSIKMQGWVT LQLTREQGFG RGFFSPRSVT GFLSDVCSAA ADEVGKIYLT ADENVQGAVF
601: DLPEEIAKDL LTMELPPGNT LTKISKLPAL QDDGPATDSY GRFSNDRGSR NNRRSRGGGA SRGRGGWDTD GEDRFRRGGR SLRSDNDSWS DDDWSGGGRK
701: SNRSSSFGSR SSSYSSRGSP SFGGRSSSFG GRESNRSFSG ACFNCGESGH RATDCPNK

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.