CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33703	Soybean	plastid	93.75	93.75
KRG96641	Soybean	nucleus	78.67	75.1
KRH68372	Soybean	nucleus	77.99	74.45
GSMUA_Achr2P01980_001	Banana	nucleus	66.3	70.11
VIT_14s0060g00060.t01	Wine grape	plastid	72.01	69.37
CDX80564	Canola	plastid	68.61	69.37
Solyc08g042050.2.1	Tomato	plastid	70.24	69.3
CDX87045	Canola	plastid	70.11	69.17
CDY66725	Canola	plastid	69.02	68.37
Bra036582.1-P	Field mustard	plastid	69.02	68.37
Bra020533.1-P	Field mustard	plastid	68.61	68.34
CDY05524	Canola	plastid	68.48	68.29
Bra009900.1-P	Field mustard	plastid	69.29	68.18
CDY61108	Canola	plastid	69.16	67.87
AT5G26742.2	Thale cress	plastid	68.75	67.65
CDY19766	Canola	plastid	69.84	67.54
Os03t0827700-01	Rice	nucleus	66.17	67.36
Zm00001d012922_P003	Maize	plastid	66.17	65.37
Zm00001d034721_P002	Maize	plastid	66.44	64.51
KXG37219	Sorghum	plastid	66.98	64.19
GSMUA_Achr11P...	Banana	plastid	66.98	63.7
TraesCS4A01G367700.1	Wheat	nucleus	64.95	62.48
TraesCS5D01G505700.2	Wheat	plastid	64.81	61.87
TraesCS5B01G504900.1	Wheat	plastid	63.72	58.33
KRH14557	Soybean	mitochondrion	20.38	46.44
KRH73571	Soybean	nucleus	36.14	44.71
KRH45952	Soybean	mitochondrion	35.19	42.81
KRG99044	Soybean	mitochondrion	36.82	42.15
KRH14556	Soybean	cytosol	16.03	41.12
KRH35418	Soybean	endoplasmic reticulum	32.47	34.29
KRG91400	Soybean	nucleus	32.2	34.2
KRH42587	Soybean	nucleus	10.33	24.76
KRH15837	Soybean	nucleus	6.25	24.6
KRH15843	Soybean	cytosol	12.23	23.75
KRH15846	Soybean	nucleus	15.76	20.79
KRH44787	Soybean	nucleus	16.98	20.26

Protein Annotations

EntrezGene:100815040	MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	EMBL:ACUP02012612
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_20G089600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1NES2	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRG90413	ProteinID:KRG90413	ProteinID:KRG90413.1	InterPro:P-loop_NTPase
PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756
UniParc:UPI000233ED59	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:33151980..33157880

Molecular Weight (calculated)

80159.7 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.362

Length

736 amino acids

Sequence
(BLAST)

001: MASTVGISSS ISICKNPSFQ LLRRPTATTT SVFFNTLPRN RNATLSSLPS AIATPTSSIL TEQPFKGLTL DDASNSNQFG YDYEPDTNVS DHELDISKLG
101: LPSPLVHSLQ QRGITSLFPI QRAVLVPALE GKDIIARAKT GTGKTLAFGI PILKGLTDDD EQSSHRRSGR LPKALVLAPT RELAKQVEKE IQESAPYLKT
201: VCVYGGVSYV TQQGALSHGV DVVVGTPGRI IDLVNGNSLK LSEVQYLVLD EADRMLAVGF EEDVEVILDK VPAQRQTMLF SATMPGWVKK LSRKYLNNPL
301: TIDLVGEQEE KLAEGIKLYA LSATASSKRT VLSDLITVYA KGGKTIVFTQ TKKDADEVSM ALTSSIASEA LHGDISQHQR ERTLNGFRQG KFTVLVATDV
401: AARGLDIPNV DLVIHYELPN DAETFVHRSG RTGRAGKEGT AILMYTSSQR RTVRSLERDV GCKFEFVSPP AMEEILESSA EQVVATLNRV HPESVDFFIA
501: TAQKLVEEQG ARALAAALAQ MSGFSQPPSC RSLINHEQGW TTLQLTRDPD TSARYFSARS VTGFLSDVYS PAADEVGKIH LIADERVQGA VFDLPEEIAK
601: ELLTKDLPSG NTISKITKLP PLQDDEPASD FYGKFSDRDR SNRRGSRDQR GFRSSRGWEG GQDSDDEFGQ GGRSFRSGNK FRMGKSSGDD WLIGGSSRSS
701: RFSSSNRSGG HGGACFNCGK PGHRASDCTT KKRVFF

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.