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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • cytosol 2
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:mitochondrion, nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_14s0060g00060.t01 Wine grape plastid 75.74 73.95
GSMUA_Achr2P01980_001 Banana nucleus 67.02 71.84
CDX80564 Canola plastid 69.03 70.74
KRG96641 Soybean nucleus 72.92 70.56
KRG90413 Soybean plastid 69.3 70.24
CDX87045 Canola plastid 70.24 70.24
KRH68372 Soybean nucleus 72.39 70.04
KRH33703 Soybean plastid 69.03 69.97
Bra020533.1-P Field mustard plastid 69.3 69.96
CDY05524 Canola plastid 69.17 69.92
CDY66725 Canola plastid 69.44 69.72
Bra009900.1-P Field mustard plastid 69.71 69.52
CDY61108 Canola plastid 69.57 69.2
Bra036582.1-P Field mustard plastid 68.77 69.04
Os03t0827700-01 Rice nucleus 66.76 68.88
AT5G26742.2 Thale cress plastid 68.9 68.72
CDY19766 Canola plastid 69.44 68.07
GSMUA_Achr11P... Banana plastid 70.11 67.57
Zm00001d012922_P003 Maize plastid 66.09 66.17
Zm00001d034721_P002 Maize plastid 66.62 65.57
TraesCS4A01G367700.1 Wheat nucleus 67.16 65.49
KXG37219 Sorghum plastid 67.16 65.23
TraesCS5D01G505700.2 Wheat plastid 67.02 64.85
TraesCS5B01G504900.1 Wheat plastid 65.68 60.95
Solyc07g044760.2.1 Tomato plastid 36.6 43.33
Solyc12g006320.1.1 Tomato plastid 35.79 41.52
Solyc03g007010.2.1 Tomato nucleus 30.43 33.28
Solyc06g035450.2.1 Tomato nucleus 16.76 31.17
Solyc07g005890.2.1 Tomato nucleus 17.56 25.54
Protein Annotations
MapMan:16.12.2.1.1.5Gene3D:3.30.70.1800Gene3D:3.40.50.300Gene3D:4.10.60.10InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166
GO:GO:0000373GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003824
GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139GO:GO:0006950
GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009507GO:GO:0009536GO:GO:0009570
GO:GO:0009628GO:GO:0009651GO:GO:0009658GO:GO:0009941GO:GO:0009987GO:GO:0010501
GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0042254InterPro:GUCTInterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR001878InterPro:IPR014001InterPro:IPR014014UniProt:K4CK63
InterPro:P-loop_NTPasePFAM:PF00098PFAM:PF00270PFAM:PF00271PFAM:PF08152PFscan:PS50158
PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF326InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343SMART:SM00487SMART:SM00490SUPFAM:SSF52540SUPFAM:SSF57756EnsemblPlantsGene:Solyc08g042050.2
EnsemblPlants:Solyc08g042050.2.1UniParc:UPI000276C25EInterPro:Znf_CCHCInterPro:Znf_CCHC_sfSEG:seg:
Description
DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G26742) UniProtKB/Swiss-Prot;Acc:Q8L7S8]
Coordinates
chr8:-:24016201..24026339
Molecular Weight (calculated)
81523.1 Da
IEP (calculated)
6.665
GRAVY (calculated)
-0.434
Length
746 amino acids
Sequence
(BLAST)
001: MASSSSIIGV SSIYQTNPSL ELSRRPTATP PLSLPFSIEK SNFHVHVRLR RPFLASAVVT PTSSVLSEEA FKGIGGFGKD SLNVSESEYD SEDEVEDNES
101: NEDELSVSKL GLPHRLVDAL EKRGITQLFP IQRAVLVPAL EGRDIIARAK TGTGKTLAFG IPVLKKLSTD EEMRNTQRRG RLPKVLVLAP TRELANQVEK
201: EMKESAPYLN TVCIYGGVSY ATQQNALSRG VDVVVGTPGR LIDLINNNTL KLGEVEYLVL DEADQMLAVG FEEDVEVILE KLPPQRQSML FSATMPGWVK
301: KLSRKYLNNP LTIDLVGDQD EKLAEGIKLY ALSATSTSKR SILGDLVTVY AKGGKTIVFT QTKRDADEVS MALSNSISSE ALHGDISQHQ RERTLNGFRQ
401: GKFTVLVATD VASRGLDIPN VDLVIHYELP NDPETFVHRS GRTGRAGKEG IAILMYTGSQ RRTVRSLERD VGCKFEFVSP PSVKEVLESS AEHVVAALNG
501: VHPESVEYFI PTAQQLMEQQ GVNSLAAALA LLGGFSKPPS SRSLITHEQG WTTLQLTRDS ETSRGFLSAR SVTGFLSDVY SPAADEVGKI HLIADERVQG
601: AIFDLPEETA ADLLNQELPP GNTISKITKL PALQDDGPAG DFYGRFSSRD TRGTRGGLRD RRGRYSQGSS SGRYSDNDDD NWGNDSRSRG GRTRRGGSDW
701: LISGDRDKRS SRSFSGGSRD RSFGGACFNC GRSGHRASEC PNKRDY
Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)
001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF
Arabidopsis Description
RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.