Factsheet for Bra020533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05524	Canola	plastid	99.46	99.59
Bra036582.1-P	Field mustard	plastid	93.23	92.73
Bra009900.1-P	Field mustard	plastid	93.5	92.38
AT5G26742.2	Thale cress	plastid	90.53	89.44
VIT_14s0060g00060.t01	Wine grape	plastid	74.42	71.99
GSMUA_Achr2P01980_001	Banana	nucleus	67.79	71.98
KRG96641	Soybean	nucleus	73.21	70.17
Solyc08g042050.2.1	Tomato	plastid	69.96	69.3
Os03t0827700-01	Rice	nucleus	67.79	69.29
KRH68372	Soybean	nucleus	72.26	69.26
KRH33703	Soybean	plastid	68.74	69.02
KRG90413	Soybean	plastid	68.34	68.61
GSMUA_Achr11P...	Banana	plastid	71.72	68.48
Zm00001d012922_P003	Maize	plastid	67.93	67.38
Zm00001d034721_P002	Maize	plastid	68.2	66.49
KXG37219	Sorghum	plastid	68.88	66.28
TraesCS4A01G367700.1	Wheat	nucleus	68.06	65.75
TraesCS5D01G505700.2	Wheat	plastid	68.2	65.37
TraesCS5B01G504900.1	Wheat	plastid	66.85	61.44
Bra023836.1-P	Field mustard	mitochondrion	37.48	44.89
Bra031349.1-P	Field mustard	mitochondrion	35.86	44.02
Bra035903.1-P	Field mustard	nucleus	30.58	35.7
Bra029275.1-P	Field mustard	nucleus	30.45	34.14
Bra033519.1-P	Field mustard	cytosol	18.67	25.99

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra020533	EnsemblPlants:Bra020533.1
EnsemblPlants:Bra020533.1-P	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4DVI9
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0002546C9C
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

AT5G26742 (E=0.0) emb1138 | emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding

Coordinates

chrA02:-:24730972..24735603

Molecular Weight (calculated)

79561.0 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.363

Length

739 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVPHLETSK PTSQKRSCFS PLSLDNPFFS SPISLRTTRL IHSSSAVATP NSVLSEEAFK SLGLSDNGSE EDDGEELAIS KLGLPQRLGE
101: SLEKRGITHL FPIQRAVLVP ALQGRDIIAR AKTGTGKTLA FGIPIIKRLT EQAGDYSAFR KSGRLPKFLV LAPTRELAKQ VEKEIKESAP YLSTVCVYGG
201: VSYTIQQSAL TRGVDVVVGT PGRIIDLIEG RSLKLGEVEY LVLDEADQML AVGFEEAVES ILENLPQKRQ SMLFSATMPA WVKKLARKYL DSPLNIDLVG
301: DQDEKLAEGI KLYAISATST SKRTILSDLI TVYAKGGKTI VFTQTKRDAD EVSLALSNSI ASEALHGDIS QHQRERTLNG FRQGKFTVLV ATDVASRGLD
401: IPNVDLVIHY ELPNDPETFV HRSGRTGRAG KEGSAILMHS SSQMRTVRSL ERDVGCRFEF ISPPTVGDVL EASADQVVST LNGVHPESIK FFSATAQKLH
501: EEKGTDALAA ALAHLSGFSQ PPSSRSLLSH EQGWVTLQLI RDSTNSRGFL SARSVTGFLS DVYGPAADEV GKIFLIADER VQGAVFDLPE DIAKDLLEKE
601: MPEGNSVSMI TKLPPLQDDG PSSDNYGRFS SRDRMPRGGG GGGSRGSRFG GRGGSSRGRD SWGGDSDRRS RSSGGGGSSW SRGGGRSRGS SDDWLIGGGS
701: DRRSSSRRAP SRERSFGGAC FNCGSSGHRA ADCPDKRGF

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.