Factsheet for Bra023836.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46329	Canola	mitochondrion	87.2	98.0
AT3G22330.1	Thale cress	mitochondrion	85.25	85.39
Bra031349.1-P	Field mustard	mitochondrion	78.93	80.9
Zm00001d008884_P001	Maize	cytosol	21.07	75.58
Zm00001d030797_P001	Maize	mitochondrion	23.01	68.27
Zm00001d048578_P001	Maize	cytosol	23.34	61.54
KRH73571	Soybean	nucleus	58.67	60.84
KRH45952	Soybean	mitochondrion	58.83	60.0
PGSC0003DMT400074131	Potato	plastid	47.81	59.24
KRG99044	Soybean	mitochondrion	60.94	58.48
Os07t0143700-01	Rice	plastid	30.79	57.75
HORVU2Hr1G060640.15	Barley	cytosol	49.59	57.3
VIT_12s0142g00670.t01	Wine grape	plastid	60.62	56.16
EER97966	Sorghum	mitochondrion	54.62	55.98
Solyc07g044760.2.1	Tomato	plastid	56.4	55.24
TraesCS2A01G253700.1	Wheat	mitochondrion	54.94	54.77
Zm00001d018787_P001	Maize	mitochondrion	53.81	54.52
TraesCS2B01G273300.1	Wheat	plastid	54.62	54.44
EES17375	Sorghum	mitochondrion	54.46	54.37
Zm00001d041480_P001	Maize	mitochondrion	52.51	54.09
Zm00001d031050_P002	Maize	mitochondrion	53.48	54.01
TraesCS2D01G254200.1	Wheat	mitochondrion	54.13	53.96
GSMUA_Achr7P00980_001	Banana	mitochondrion	45.22	53.86
TraesCS5D01G057800.1	Wheat	mitochondrion	52.19	53.58
TraesCS5B01G052100.1	Wheat	mitochondrion	51.38	53.1
TraesCS5A01G047300.2	Wheat	mitochondrion	53.0	53.08
HORVU5Hr1G011460.3	Barley	mitochondrion	53.32	52.64
Os12t0611200-01	Rice	nucleus	53.32	52.39
Solyc12g006320.1.1	Tomato	plastid	53.65	51.48
GSMUA_Achr2P13080_001	Banana	plastid	57.05	47.7
Bra020533.1-P	Field mustard	plastid	44.89	37.48
Bra009900.1-P	Field mustard	plastid	44.57	36.76
Bra036582.1-P	Field mustard	plastid	43.92	36.47
GSMUA_Achr2P13070_001	Banana	cytosol	59.81	31.22
Bra035903.1-P	Field mustard	nucleus	30.15	29.38
Bra029275.1-P	Field mustard	nucleus	30.15	28.22
Bra033519.1-P	Field mustard	cytosol	18.96	22.03

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra023836	EnsemblPlants:Bra023836.1	EnsemblPlants:Bra023836.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0030312	GO:GO:0043234	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4E4Y2	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002544359
SEG:seg	:	:	:	:	:

Description

AT3G22330 (E=1e-232) PMH2 | PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA01:-:20320020..20322446

Molecular Weight (calculated)

65405.0 Da

IEP (calculated)

9.819

GRAVY (calculated)

-0.339

Length

617 amino acids

Sequence
(BLAST)

001: MIATVLRRSC VDASRRTLSA SLTSINAALF HHFTPSAAAK VSDVKPSFAL GNQFGVKSRG FHFQSGPSEF RSTMVSPAGF AISETSDRAI ADSESSGDGL
101: AIAELGISPE IVKALSAKGI EKLFPIQKAV LEPATQGRDM IGRARTGTGK TLAFGIPIID KIIKFNAKHG RGRNPLCLVL APTRELARQV EKEFRESAPS
201: LDTICVYGGT PIGQQMRQLD YGVDVAVGTP GRIIDLIKRG ALNLSEVQFV VLDEADQMLQ VGFAEDVEII LERLPEKRQS MMFSATMPSW IRSLTKKYLN
301: DPLTIDLVGD SDQKLADGIT TYSIMADSYG RASIIGPLVT EHAKGGKCIV FTQTKRDADR LSYGLARTFK CEALHGDISQ SQRERTLAGF RDGHFNILVA
401: TDVAARGLDV PNVDLVIHYE LPNNTETFVH RTGRTGRAGK KGSAILIYSQ DQSRAVKIIE REVGSRFTEL PSIAVERGGS IYEGIGGRSG ESFGGGMRDR
501: GSSFGGRSGG GGYGGYGSSS GRSGGSGNRY SGGSERSGFG SFGSDRSSGF GGFGSDRSSQ SSGRGGFGGR SDDYGSSGGR SNRSSGFGGF GSDRSSQSGG
601: RSSFGGGFGS NDGKRSY

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.