CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041480_P001	Maize	mitochondrion	90.61	93.49
Zm00001d031050_P002	Maize	mitochondrion	91.26	92.31
Os12t0611200-01	Rice	nucleus	80.91	79.62
TraesCS5D01G057800.1	Wheat	mitochondrion	72.82	74.88
TraesCS5B01G052100.1	Wheat	mitochondrion	72.33	74.87
TraesCS5A01G047300.2	Wheat	mitochondrion	74.6	74.84
HORVU5Hr1G011460.3	Barley	mitochondrion	74.43	73.6
CDY46330	Canola	nucleus	28.16	59.59
KRH14557	Soybean	mitochondrion	31.07	59.44
EER97966	Sorghum	mitochondrion	57.77	59.3
KRH73571	Soybean	nucleus	55.18	57.31
PGSC0003DMT400074131	Potato	plastid	46.12	57.23
CDY37406	Canola	mitochondrion	47.09	57.06
CDY46329	Canola	mitochondrion	50.16	56.47
Solyc07g044760.2.1	Tomato	plastid	56.63	55.56
KRH45952	Soybean	mitochondrion	54.37	55.54
Bra023836.1-P	Field mustard	mitochondrion	54.37	54.46
KRH14556	Soybean	cytosol	25.08	54.01
KRG99044	Soybean	mitochondrion	56.15	53.97
VIT_12s0142g00670.t01	Wine grape	plastid	58.09	53.9
AT3G22330.1	Thale cress	mitochondrion	53.56	53.73
CDY10634	Canola	mitochondrion	51.94	53.32
Bra031349.1-P	Field mustard	mitochondrion	51.94	53.32
CDY37408	Canola	mitochondrion	51.78	53.24
GSMUA_Achr7P00980_001	Banana	mitochondrion	44.17	52.7
AT3G22310.1	Thale cress	mitochondrion	51.13	51.8
Solyc12g006320.1.1	Tomato	plastid	53.24	51.17
GSMUA_Achr2P13080_001	Banana	plastid	58.58	49.05
KXG37219	Sorghum	plastid	44.5	35.81
GSMUA_Achr2P13070_001	Banana	cytosol	59.87	31.3
EER97062	Sorghum	nucleus	31.07	27.0
EES07679	Sorghum	nucleus	18.28	21.77
OQU76875	Sorghum	cytosol	0.97	13.04

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EntrezGene:8084385	UniProt:C5YRW1	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EES17375
ProteinID:EES17375	ProteinID:EES17375.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF296	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3008G165900	SUPFAM:SSF52540	unigene:Sbi.10832	UniParc:UPI0001A8822F	RefSeq:XP_002443537.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:59936479..59940813

Molecular Weight (calculated)

64744.9 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.248

Length

618 amino acids

Sequence
(BLAST)

001: MYAALRRAAP LRRRAVSALA AALLQHQPAA LGAAVAPRAP TLLPAAAWFH SSPAWLGFRE TGAAGAAARA EFAAEEGSFY EEDKRAPATG GAAAEEGLEI
101: AKLGISNKIV ERLAKKGITK LFPIQRAVLE PAMQGRDMVG RAKTGTGKTL AFGIPILDAI IRHNEKYKPG KFPLAIVLAP TRELAKQVER EFLDSSPLET
201: LCVYGGTPIM QQIRQLNYGV DVVIGTPGRV IDLLKRGALS LAEIRFVVLD EADQMLSVGF DQDVETILER VPPQRQTLMF SATMPTWIRK LTQKYLNSPV
301: TVDLVGEDDQ KLAEGISLLS VSSENRQKPA VLGELIKEHA KGGKCIVFTQ TKRDADRLSH SMSRSFQCEA LHGDISQSQR ERTLGGFRDG RFNILIATDV
401: AARGLDIPNV DLVIHYELPN SSEIFVHRSG RTGRAGKKGT AIVMYNYEQS RAVRVIERDV GCKFTELPKI NVEGSVLLDA GFDSFGGGGG GYGGSNYGRS
501: RGFGGRGGGG FGRSGGGGGF GNSGFGRSSG GFGDSGFDRS GGGGFGRSGG GGGFGDSGFG RSGGSGGFGD SGFGRSSGGG SGFGRSGGFG ESGSGRFGGG
601: FGSSGSGSFG GFGDKNSR

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.