CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10634	Canola	mitochondrion	98.17	98.01
Bra031349.1-P	Field mustard	mitochondrion	97.84	97.67
CDY37406	Canola	mitochondrion	81.86	96.47
AT3G22310.1	Thale cress	mitochondrion	84.86	83.61
CDY46329	Canola	mitochondrion	76.04	83.24
CDY46330	Canola	nucleus	40.43	83.22
Zm00001d008884_P001	Maize	cytosol	21.13	73.84
Zm00001d030797_P001	Maize	mitochondrion	23.13	66.83
Zm00001d048578_P001	Maize	cytosol	23.63	60.68
KRH73571	Soybean	nucleus	57.9	58.49
PGSC0003DMT400074131	Potato	plastid	48.25	58.23
Os07t0143700-01	Rice	plastid	31.78	58.05
KRH45952	Soybean	mitochondrion	58.4	58.02
EER97966	Sorghum	mitochondrion	55.41	55.32
KRG99044	Soybean	mitochondrion	59.07	55.21
VIT_12s0142g00670.t01	Wine grape	plastid	60.9	54.95
HORVU2Hr1G060640.15	Barley	cytosol	47.92	53.93
GSMUA_Achr7P00980_001	Banana	mitochondrion	46.09	53.47
Zm00001d018787_P001	Maize	mitochondrion	54.08	53.37
Solyc07g044760.2.1	Tomato	plastid	55.74	53.17
Zm00001d031050_P002	Maize	mitochondrion	52.75	51.88
EES17375	Sorghum	mitochondrion	53.24	51.78
Os12t0611200-01	Rice	nucleus	53.74	51.43
TraesCS5B01G052100.1	Wheat	mitochondrion	51.08	51.42
Zm00001d041480_P001	Maize	mitochondrion	51.08	51.25
TraesCS5D01G057800.1	Wheat	mitochondrion	51.25	51.25
TraesCS2A01G253700.1	Wheat	mitochondrion	52.75	51.21
TraesCS2B01G273300.1	Wheat	plastid	52.58	51.05
TraesCS5A01G047300.2	Wheat	mitochondrion	52.08	50.81
TraesCS2D01G254200.1	Wheat	mitochondrion	52.25	50.73
Solyc12g006320.1.1	Tomato	plastid	53.74	50.23
HORVU5Hr1G011460.3	Barley	mitochondrion	51.75	49.76
GSMUA_Achr2P13080_001	Banana	plastid	56.41	45.94
CDX80564	Canola	plastid	43.76	36.13
CDY66725	Canola	plastid	44.43	35.94
CDX87045	Canola	plastid	44.59	35.92
CDY05524	Canola	plastid	44.09	35.91
CDY61108	Canola	plastid	44.43	35.6
CDY19766	Canola	plastid	44.09	34.82
CDY28363	Canola	plastid	14.97	32.85
GSMUA_Achr2P13070_001	Banana	cytosol	58.07	29.53
CDX87236	Canola	nucleus	29.62	27.94
CDY16789	Canola	nucleus	29.28	27.72
CDY44172	Canola	cytosol	19.3	21.85
CDY22890	Canola	cytosol	19.13	21.66
CDY34116	Canola	cytosol	12.98	15.29
CDY44622	Canola	cytosol	13.64	9.49

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	GO:A0A078HKL4	UniProt:A0A078HKL4	EnsemblPlants:CDY37408	ProteinID:CDY37408
ProteinID:CDY37408.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00063981001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EEFB99	SEG:seg	:	:	:

Description

BnaC05g30220DBnaC05g30220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKL4]

Coordinates

chrLK032399:+:304614..308290

Molecular Weight (calculated)

63511.1 Da

IEP (calculated)

9.629

GRAVY (calculated)

-0.355

Length

601 amino acids

Sequence
(BLAST)

001: MISTVLRRSV LGASRRTQTL SASLTSINAA LLHHLTPSPS AATVSVLKSG VALPQTPNPY GVKARDFHFQ SRPSEFRASM ASSAGFAAQD YAPSYDGGDS
101: EESVGSSGDG GDGLAISDLG ISPEIVKALS GRGIDKLFPI QKAVLEPAMQ GRDMIGRART GTGKTLAFGI PVIDKIIKFN AKHGRGKNPL CLVLAPTREL
201: ARQVEKEFRE SAPSLDTICL YGGTPIGQQM RELNYGVDVA VGTPGRIIDL MKRGALNLSE VQFIVLDEAD QMLQVGFAED VEVILQKLPE KRQSMMFSAT
301: MPSWIRSLTK KYLNNPLTID LVGDSDQKLA DGITMYSISA DSYGKASIIG PLVEAHGKGG KCIVFTQTKR DADRLSYGLA KTFKCEALHG DISQSQRERT
401: LAGFRDGNFN ILVATDVAAR GLDVPNVDLV IHYELPNNTE TFVHRTGRTG RAGKKGNAIL IHGPEQSRAV KMIEREVGSK FTELPSIPVE RGSGSMFEGI
501: GGRSGGSYGG GMRDRSSSYG GRSGGYGGGG GSGRYGGDRS EGSGNRYSGG SDRSSGYGGF GSGGSNRSSG GYGGFGSDRS SQSSGRSSFG GFGLKDPNSS
601: Y

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.