Factsheet for TraesCS2B01G273300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G254200.1	Wheat	mitochondrion	96.93	96.93
TraesCS2A01G253700.1	Wheat	mitochondrion	96.61	96.61
HORVU2Hr1G060640.15	Barley	cytosol	79.32	91.95
Zm00001d008884_P001	Maize	cytosol	25.36	91.28
Os07t0143700-01	Rice	plastid	44.1	82.98
Zm00001d030797_P001	Maize	mitochondrion	27.79	82.69
Zm00001d048578_P001	Maize	cytosol	29.08	76.92
EER97966	Sorghum	mitochondrion	73.18	75.25
Zm00001d018787_P001	Maize	mitochondrion	73.67	74.88
CDY46330	Canola	nucleus	27.95	59.25
KRH14557	Soybean	mitochondrion	30.69	58.82
PGSC0003DMT400074131	Potato	plastid	47.01	58.43
CDY46329	Canola	mitochondrion	50.4	56.83
CDY37406	Canola	mitochondrion	46.37	56.27
Bra023836.1-P	Field mustard	mitochondrion	54.44	54.62
TraesCS5B01G052100.1	Wheat	mitochondrion	52.67	54.61
VIT_12s0142g00670.t01	Wine grape	plastid	58.64	54.5
KRH45952	Soybean	mitochondrion	52.83	54.05
AT3G22330.1	Thale cress	mitochondrion	53.47	53.73
KRH73571	Soybean	nucleus	51.37	53.45
KRG99044	Soybean	mitochondrion	55.25	53.19
CDY10634	Canola	mitochondrion	51.37	52.82
AT3G22310.1	Thale cress	mitochondrion	52.02	52.79
CDY37408	Canola	mitochondrion	51.05	52.58
Bra031349.1-P	Field mustard	mitochondrion	50.89	52.33
Solyc07g044760.2.1	Tomato	plastid	52.83	51.9
Solyc12g006320.1.1	Tomato	plastid	51.86	49.92
KRH14556	Soybean	cytosol	21.0	45.3
TraesCS5B01G504900.1	Wheat	plastid	44.1	33.96
TraesCS5B01G309500.1	Wheat	nucleus	29.89	26.43
TraesCS6B01G391200.1	Wheat	nucleus	17.93	21.1

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2B01G273300	EnsemblPlants:TraesCS2B01G273300.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr2B:+:374677681..374682446

Molecular Weight (calculated)

67393.8 Da

IEP (calculated)

10.019

GRAVY (calculated)

-0.480

Length

619 amino acids

Sequence
(BLAST)

001: MNSLLRRALS ASSSPARPQR ALLSALLSSP PAGSPQPCRP PAPQPLEPPK QRAFHASPRP LGFRSTTPAP WPGTVSEAGA AAGDDGLEVA RLGISPRIVE
101: RLAARGINRL FPIQRAVLEP AMQGKDMIGR ARTGTGKTLA FGIPIMDRIL RHNEKNGSGR NPLAIILAPT RELARQVEKE FRESAPLDTL CVYGGVPISQ
201: QMRTLNYGVD IVVGTPGRVI DLLRRGVLNL SEIQFVVLDE ADQMLAVGFD EAVEVIMEKL PQNRQSMLFS ATMPSWIRKL TNQYLKDPVI IDLVGDSEQK
301: LPEGISLYSI VSENYGKSSI LGPLIKEHAD GGKCIVFTQT KREADRLAYA MGRSYACQAL HGDISQNQRE RTLSGFRDSR FNILVATDVA ARGLDIPNVD
401: LVVHYEIPNS SELFVHRSGR TARAGKKGIA ILMYTYEQSR TVKVIEQDIG CRFTELPKVA ATDEAAELFN VMRDSRSRSV GTRRSGGSSF SHDDGFGERH
501: SRGFGDFDCF GGTPNRAGWS GDAGSRYRGG FGDSRRPSQP SNGFGRSSGF GDSRRGPQPS DGFGRSSFNR PGGFGEFEEG NSRSGRFPRR SDDSDPSRYG
601: RSSNGFGTSD FGRPGSIKD

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.