Factsheet for Zm00001d030797_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	80.29	97.09
Zm00001d048578_P001	Maize	cytosol	85.58	76.07
Os07t0143700-01	Rice	plastid	80.29	50.76
KRH14557	Soybean	mitochondrion	64.9	41.8
Zm00001d033226_P001	Maize	cytosol	22.6	37.6
Zm00001d032793_P001	Maize	cytosol	9.62	31.75
HORVU2Hr1G060640.15	Barley	cytosol	78.37	30.52
Zm00001d018787_P001	Maize	mitochondrion	88.46	30.21
EER97966	Sorghum	mitochondrion	86.06	29.73
PGSC0003DMT400074131	Potato	plastid	67.79	28.31
TraesCS2B01G273300.1	Wheat	plastid	82.69	27.79
TraesCS2A01G253700.1	Wheat	mitochondrion	82.21	27.63
TraesCS2D01G254200.1	Wheat	mitochondrion	81.73	27.46
CDY37406	Canola	mitochondrion	66.83	27.25
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	31.73	26.4
CDY46329	Canola	mitochondrion	68.75	26.05
CDY37408	Canola	mitochondrion	66.83	23.13
CDY10634	Canola	mitochondrion	66.83	23.09
Bra031349.1-P	Field mustard	mitochondrion	66.83	23.09
KRH73571	Soybean	nucleus	65.87	23.03
Bra023836.1-P	Field mustard	mitochondrion	68.27	23.01
AT3G22310.1	Thale cress	mitochondrion	66.83	22.79
VIT_12s0142g00670.t01	Wine grape	plastid	72.6	22.67
AT3G22330.1	Thale cress	mitochondrion	66.83	22.56
Solyc07g044760.2.1	Tomato	plastid	68.27	22.54
Zm00001d043739_P001	Maize	mitochondrion	22.12	22.12
Zm00001d031050_P002	Maize	mitochondrion	64.9	22.09
Solyc12g006320.1.1	Tomato	plastid	67.79	21.93
Zm00001d041480_P001	Maize	mitochondrion	62.98	21.87
KRH45952	Soybean	mitochondrion	62.98	21.65
Zm00001d031584_P001	Maize	cytosol	20.67	20.87
KRG99044	Soybean	mitochondrion	64.42	20.84
Zm00001d012922_P003	Maize	plastid	56.25	15.7
Zm00001d034721_P002	Maize	plastid	56.25	15.44
Zm00001d035797_P001	Maize	mitochondrion	36.06	13.16
Zm00001d052036_P001	Maize	plastid	12.98	12.86
CDY46330	Canola	nucleus	17.31	12.33
Zm00001d021196_P004	Maize	nucleus	41.35	12.16
Zm00001d006160_P001	Maize	nucleus	40.87	12.07
Zm00001d018375_P001	Maize	nucleus	26.44	10.52
Zm00001d049075_P001	Maize	extracellular, golgi	22.12	9.5
Zm00001d050438_P002	Maize	extracellular	13.46	8.7
Zm00001d035226_P001	Maize	plasma membrane	10.58	6.32
Zm00001d024138_P001	Maize	plastid	7.21	5.32
KRH14556	Soybean	cytosol	0.96	0.7
Zm00001d049254_P001	Maize	cytosol	0.48	0.52
Zm00001d046048_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6KEJ0	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:IPR014001	ProteinID:ONM01562.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192
PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0008DB3486	EnsemblPlantsGene:Zm00001d030797
EnsemblPlants:Zm00001d030797_P001	EnsemblPlants:Zm00001d030797_T001	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 53

Coordinates

chr1:+:160156130..160157319

Molecular Weight (calculated)

22933.2 Da

IEP (calculated)

9.780

GRAVY (calculated)

-0.013

Length

208 amino acids

Sequence
(BLAST)

001: MAPPRRSAMA AHLRSAAVRL GAAHLRSAAR AVLEPAMQGK DIIGRARTGT GKTLAFGIPI MDKILSYNEK NGNPLAIILA PTRELARQVE KEFRESAPLD
101: TLCVYGGVPI NQQMRALKYG DDIVVGTPGR VIDLLRRGVL NLSQIQFVVL DEADQMLAVG FDEDVEVIME QLPQNRQSML FSATMPSWIR KNSNKYLKDP
201: VIIDLLVL

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.