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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 7
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031349.1-P Field mustard mitochondrion 99.17 99.17
CDY37408 Canola mitochondrion 98.01 98.17
CDY37406 Canola mitochondrion 80.07 94.51
CDY46329 Canola mitochondrion 76.41 83.79
AT3G22310.1 Thale cress mitochondrion 84.72 83.61
CDY46330 Canola nucleus 40.2 82.88
Zm00001d008884_P001 Maize cytosol 21.1 73.84
Zm00001d030797_P001 Maize mitochondrion 23.09 66.83
Zm00001d048578_P001 Maize cytosol 23.59 60.68
KRH73571 Soybean nucleus 57.97 58.66
KRH45952 Soybean mitochondrion 58.64 58.35
PGSC0003DMT400074131 Potato plastid 48.17 58.23
Os07t0143700-01 Rice plastid 31.73 58.05
KRG99044 Soybean mitochondrion 59.47 55.68
EER97966 Sorghum mitochondrion 55.32 55.32
VIT_12s0142g00670.t01 Wine grape plastid 60.8 54.95
HORVU2Hr1G060640.15 Barley cytosol 48.01 54.12
GSMUA_Achr7P00980_001 Banana mitochondrion 46.18 53.67
Zm00001d018787_P001 Maize mitochondrion 54.15 53.53
Solyc07g044760.2.1 Tomato plastid 55.65 53.17
Zm00001d031050_P002 Maize mitochondrion 52.82 52.05
EES17375 Sorghum mitochondrion 53.32 51.94
TraesCS2A01G253700.1 Wheat mitochondrion 53.32 51.86
Os12t0611200-01 Rice nucleus 53.82 51.59
TraesCS5B01G052100.1 Wheat mitochondrion 51.0 51.42
Zm00001d041480_P001 Maize mitochondrion 51.16 51.42
TraesCS2B01G273300.1 Wheat plastid 52.82 51.37
TraesCS2D01G254200.1 Wheat mitochondrion 52.82 51.37
TraesCS5D01G057800.1 Wheat mitochondrion 51.16 51.25
TraesCS5A01G047300.2 Wheat mitochondrion 51.83 50.65
Solyc12g006320.1.1 Tomato plastid 53.65 50.23
HORVU5Hr1G011460.3 Barley mitochondrion 51.99 50.08
GSMUA_Achr2P13080_001 Banana plastid 56.64 46.21
CDX80564 Canola plastid 43.52 35.99
CDY66725 Canola plastid 44.35 35.94
CDX87045 Canola plastid 44.52 35.92
CDY05524 Canola plastid 44.02 35.91
CDY61108 Canola plastid 44.19 35.47
CDY19766 Canola plastid 44.02 34.82
CDY28363 Canola plastid 14.95 32.85
GSMUA_Achr2P13070_001 Banana cytosol 58.31 29.7
CDX87236 Canola nucleus 29.57 27.94
CDY16789 Canola nucleus 29.24 27.72
CDY44172 Canola cytosol 19.44 22.03
CDY22890 Canola cytosol 19.27 21.85
CDY34116 Canola cytosol 12.96 15.29
CDY44622 Canola cytosol 13.62 9.49
Protein Annotations
MapMan:16.12.2.2.1.4Gene3D:3.40.50.300GO:A0A078FCF7UniProt:A0A078FCF7EnsemblPlants:CDY10634ProteinID:CDY10634
ProteinID:CDY10634.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00048372001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR014014InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFscan:PS51192PFscan:PS51194
PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF326InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490
SUPFAM:SSF52540UniParc:UPI0004EF00A9SEG:seg:::
Description
BnaA05g17280DBnaA05g17280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCF7]
Coordinates
chrLK032005:+:160188..162842
Molecular Weight (calculated)
63519.1 Da
IEP (calculated)
9.545
GRAVY (calculated)
-0.353
Length
602 amino acids
Sequence
(BLAST)
001: MISTVLRRSV LGASRRTQTL SASLTSLNAA LFHHLAPSSS AAATVSDLKS GVALPQTPNP YGVKARDFHF QSGPSEFRAS MASPAGFAAQ DYAPSYDGGD
101: SEESVGSSSN GGDGLAISEL GISPEIVKAL SGRGIDKLFP IQKAVLEPAM QGRDMIGRAR TGTGKTLAFG IPVIDKIIKF NAKHGRGKNP LCLVLAPTRE
201: LARQVEKEFR ESAPSLDTIC LYGGTPIGQQ MRELNYGVDV AVGTPGRIID LMKRGALNLS EVQFIVLDEA DQMLQVGFAE DVEVILQKLP EKRQSMMFSA
301: TMPSWIRSLT KKYLNNPLTI DLVGDSDQKL ADGITMYSIS ADSYGKASII GPLVEAHGKG GKCIVFTQTK RDADRLSYGL AKTFKCEALH GDISQSQRER
401: TLAGFRDGNF NILVATDVAA RGLDVPNVDL VIHYELPNNT ETFVHRTGRT GRAGKKGNAI LIHGPEQSRA VKMIEREVGS KFTELPSIPV ERGSGSMFEG
501: IGGRSGGSYG GGMRDRSSSY GGRSGGYGGG GGSGRYGGDR SEGSGSRYSG GSDRSSGYGG FGSGGSNRSS GGYGGFGSDR SSQSSGRSSF GGFGLKDPNS
601: SY
Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)
001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY
Arabidopsis Description
RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.