Factsheet for Solyc07g044760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	20.95	76.74
Solyc12g006320.1.1	Tomato	plastid	72.86	71.38
Zm00001d030797_P001	Maize	mitochondrion	22.54	68.27
Zm00001d048578_P001	Maize	cytosol	23.33	62.82
CDY46330	Canola	nucleus	29.05	62.67
KRH73571	Soybean	nucleus	56.67	60.0
CDY46329	Canola	mitochondrion	52.22	59.93
Os07t0143700-01	Rice	plastid	30.63	58.66
CDY37406	Canola	mitochondrion	46.98	58.04
HORVU2Hr1G060640.15	Barley	cytosol	48.41	57.12
VIT_12s0142g00670.t01	Wine grape	plastid	60.16	56.91
EES17375	Sorghum	mitochondrion	55.56	56.63
Zm00001d031050_P002	Maize	mitochondrion	54.92	56.63
Zm00001d041480_P001	Maize	mitochondrion	53.65	56.43
Bra023836.1-P	Field mustard	mitochondrion	55.24	56.4
KRH45952	Soybean	mitochondrion	53.97	56.2
AT3G22330.1	Thale cress	mitochondrion	54.76	56.01
TraesCS5B01G052100.1	Wheat	mitochondrion	52.86	55.78
CDY37408	Canola	mitochondrion	53.17	55.74
EER97966	Sorghum	mitochondrion	53.17	55.65
Bra031349.1-P	Field mustard	mitochondrion	53.17	55.65
CDY10634	Canola	mitochondrion	53.17	55.65
TraesCS5A01G047300.2	Wheat	mitochondrion	53.97	55.19
TraesCS5D01G057800.1	Wheat	mitochondrion	52.38	54.91
AT3G22310.1	Thale cress	mitochondrion	52.86	54.59
KRG99044	Soybean	mitochondrion	55.56	54.43
Os12t0611200-01	Rice	nucleus	54.13	54.3
Zm00001d018787_P001	Maize	mitochondrion	52.22	54.02
HORVU5Hr1G011460.3	Barley	mitochondrion	53.49	53.92
TraesCS2A01G253700.1	Wheat	mitochondrion	52.22	53.15
TraesCS2D01G254200.1	Wheat	mitochondrion	52.06	52.99
TraesCS2B01G273300.1	Wheat	plastid	51.9	52.83
GSMUA_Achr7P00980_001	Banana	mitochondrion	43.33	52.7
GSMUA_Achr2P13080_001	Banana	plastid	56.67	48.37
Solyc08g042050.2.1	Tomato	plastid	43.33	36.6
GSMUA_Achr2P13070_001	Banana	cytosol	59.68	31.81
Solyc06g035450.2.1	Tomato	nucleus	19.52	30.67
Solyc03g007010.2.1	Tomato	nucleus	30.63	28.3
Solyc07g005890.2.1	Tomato	nucleus	18.41	22.61

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CEN4	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g044760.2	EnsemblPlants:Solyc07g044760.2.1
UniParc:UPI000276C7E5	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:57806593..57811791

Molecular Weight (calculated)

67150.3 Da

IEP (calculated)

9.946

GRAVY (calculated)

-0.353

Length

630 amino acids

Sequence
(BLAST)

001: MNSFVLLKKS SSLHASKRVA LNALTHLFFS PSTSGEDKFI SGNTQFNSFT TVSTANTSTN GNWVDRKFGV SVRGFHSGRY LRAGYAVANL PEDDEGLEIS
101: KLGISQEIVS ALEKKGITKL FPIQRAVLEP AMQGSDMIGR ARTGTGKTLA FGIPIMDKII RFNEKHGRGR NPLALILAPT RELAKQVDKE FFESAPGLDT
201: LCVYGGVPIS RQMSSLDRGV DVVVGTPGRI IDLLKRGALN LAEIQFVVLD EADQMLNVGF AEDVETILEN VPQKHQTLMF SATMPSWILK ITNKFLKNPV
301: HIDLVGDSDQ KLADGISLFS IACDMHQKPA ILGPLITEHA KGGKCIVFTQ TKRDADKLSY VMQKSFNCEA LHGDISQTQR ERTLSGFRQG QFNVLVATDV
401: AARGLDVPNV DLVVHYELPN SSEIFVHRSG RTGRAGKKGS AILIHSSGQH RDVKGIERDV GCRFIELPRI EVEAGATDMF SDMGRGGGRF GSYGGMGGGR
501: FGDSGSGRSG GYGNSGGRFG GQGGYSGRTG GFGGSGFGRS GGSFGGSSSG RSGNFGGSGD MRDSNRQGGF GNFGGSDRSG GFGNSNRTGG FGNFESSNRS
601: SGFGGFGSGR SSGFGDSRSD NENRSGKKFF

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.