Factsheet for Solyc03g007010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g066420.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Solyc07g066420.2.1	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079640	Potato	nucleus	94.28	95.4
Solyc06g035450.2.1	Tomato	nucleus	46.33	78.8
VIT_16s0022g02110.t01	Wine grape	plastid	70.82	69.6
GSMUA_Achr7P05930_001	Banana	nucleus	61.58	69.19
KRG91400	Soybean	nucleus	68.04	66.96
KRH35418	Soybean	endoplasmic reticulum	67.74	66.28
CDX87236	Canola	nucleus	61.73	66.09
CDY16789	Canola	nucleus	61.29	65.83
Bra035903.1-P	Field mustard	nucleus	61.0	65.72
Bra029275.1-P	Field mustard	nucleus	62.46	64.64
AT5G62190.1	Thale cress	nucleus	61.58	62.59
HORVU5Hr1G080170.2	Barley	nucleus	59.38	62.5
CDY28363	Canola	plastid	24.93	62.04
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	22.58	61.6
GSMUA_Achr4P19590_001	Banana	nucleus	63.64	60.28
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	61.14	59.57
TraesCS5B01G309500.1	Wheat	nucleus	61.0	59.43
TraesCS5A01G308900.1	Wheat	nucleus	60.7	59.23
Zm00001d006160_P001	Maize	nucleus	60.7	58.81
Os09t0520700-01	Rice	nucleus, plastid	58.94	57.76
Zm00001d021196_P004	Maize	nucleus	59.53	57.43
EER97062	Sorghum	nucleus	59.82	57.38
Zm00001d035226_P001	Maize	plasma membrane	19.94	39.08
Zm00001d049075_P001	Maize	extracellular, golgi	25.95	36.57
Zm00001d035797_P001	Maize	mitochondrion	30.21	36.14
Zm00001d049254_P001	Maize	cytosol	10.12	36.13
Zm00001d046048_P001	Maize	cytosol	9.82	35.64
Zm00001d050438_P002	Maize	extracellular	16.28	34.47
Zm00001d024138_P001	Maize	plastid	14.22	34.4
CDY34116	Canola	cytosol	23.9	31.96
Solyc07g044760.2.1	Tomato	plastid	28.3	30.63
Solyc08g042050.2.1	Tomato	plastid	33.28	30.43
Solyc12g006320.1.1	Tomato	plastid	28.3	30.02
Solyc07g005890.2.1	Tomato	nucleus	16.28	21.64
CDY44622	Canola	cytosol	24.63	19.44

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:K4BEC4	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc03g007010.2	EnsemblPlants:Solyc03g007010.2.1	UniParc:UPI0002767D76
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:1555122..1560373

Molecular Weight (calculated)

74153.7 Da

IEP (calculated)

9.263

GRAVY (calculated)

-0.403

Length

682 amino acids

Sequence
(BLAST)

001: MPALVESETM ASEDLKKLKK SGNGSSADSH KKSKKTKIDY GSDSEEIKKS KKKDKKRKAL SLDDQENGNS EVLESINLNE DEKKKKKKKK KKKEEDEAKL
101: VEEDSEEKEE DPNALSNFRI SVPLKEVLNA KGINALFPIQ AMTFDTILDG SDLVGRARTG QGKTLAFVLP ILESLINGPT KVSRKTGYGR APSVLVLLPT
201: RELALQVFAD FEVYGGAVGL TSCCLYGNSP MGQQQVQLKR GVDIVVGTPG RIKDHIERGN IDFRSLKFRV LDEVDEMLKI GFVDDVEFIL GKVEDASQVQ
301: TLLFSATLPS WVKHISSKFL KPDKKTADLV GDEKMKASKN VRHIIIPCSS SARSQLIPDI IRCYSSGGRT IIFTETRGYA SELAGILPGA RALHGDIQQS
401: QREITLSGFR SGKFLTLVAT NVAARGLDID NVQLIIQCEP PRDVEAYIHR SGRTGRAGNT GIAVMLYDPK KSNISKIERE SGVKFEHLSA PQPADVAKAA
501: GKEAAEAIAE ISDSVIPAFK AAAEELLHTS ELSPAELLAK ALAKAAGYSE IKSRSLLSSM ENCVTLLLEC GRPIFSPSFA YNVLRGFLTE DKVESIKGLT
601: LTADGKGAVF DVSADDLDTF LAGKNAQGVS LEVVTELPRL QEKDQQRGGR FGGGRGDRRN GGRFSGGRGG GGRGYGNFGR RW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.