Factsheet for TraesCS5D01G315900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 26136264

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G064900.1
TraesCS3D01G065600.1
TraesCS4A01G064400.1
TraesCS4B01G241800.1
TraesCS4D01G241400.1
TraesCS7A01G469800.1
TraesCS7B01G371900.1
TraesCS7D01G457200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	TraesCS3A01G064900.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS3D01G065600.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS4A01G064400.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS4B01G241800.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS4D01G241400.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS7A01G469800.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS7B01G371900.1	AT1G53720.1	16497658
AT5G62190.1	TraesCS7D01G457200.1	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G309500.1	Wheat	nucleus	99.29	99.29
TraesCS5A01G308900.1	Wheat	nucleus	98.43	98.57
HORVU5Hr1G080170.2	Barley	nucleus	89.0	96.14
Os09t0520700-01	Rice	nucleus, plastid	79.86	80.32
EER97062	Sorghum	nucleus	80.43	79.18
Zm00001d006160_P001	Maize	nucleus	79.29	78.84
Zm00001d021196_P004	Maize	nucleus	79.57	78.78
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	26.43	74.0
GSMUA_Achr7P05930_001	Banana	nucleus	61.71	71.17
GSMUA_Achr4P19590_001	Banana	nucleus	65.43	63.61
CDX87236	Canola	nucleus	57.57	63.27
CDY16789	Canola	nucleus	56.86	62.68
Bra035903.1-P	Field mustard	nucleus	56.43	62.4
VIT_16s0022g02110.t01	Wine grape	plastid	60.86	61.38
PGSC0003DMT400079640	Potato	nucleus	59.0	61.28
Solyc03g007010.2.1	Tomato	nucleus	59.57	61.14
Bra029275.1-P	Field mustard	nucleus	57.43	61.0
AT5G62190.1	Thale cress	nucleus	57.86	60.36
KRG91400	Soybean	nucleus	59.71	60.32
KRH35418	Soybean	endoplasmic reticulum	60.0	60.26
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	57.57	60.24
Solyc06g035450.2.1	Tomato	nucleus	33.57	58.6
CDY28363	Canola	plastid	22.0	56.2
Zm00001d035226_P001	Maize	plasma membrane	23.43	47.13
Zm00001d035797_P001	Maize	mitochondrion	36.14	44.39
Zm00001d050438_P002	Maize	extracellular	20.29	44.1
Zm00001d049075_P001	Maize	extracellular, golgi	30.0	43.39
Zm00001d049254_P001	Maize	cytosol	11.71	42.93
Zm00001d046048_P001	Maize	cytosol	11.29	42.02
Zm00001d024138_P001	Maize	plastid	16.14	40.07
TraesCS5D01G057800.1	Wheat	mitochondrion	27.71	32.28
TraesCS5D01G505700.2	Wheat	plastid	34.71	31.52
TraesCS2D01G254200.1	Wheat	mitochondrion	25.86	29.24
CDY34116	Canola	cytosol	20.57	28.24
TraesCS6D01G341300.1	Wheat	nucleus	15.86	21.1
CDY44622	Canola	cytosol	22.14	17.94
TraesCS3D01G247800.1	Wheat	nucleus	11.57	17.65

Protein Annotations

Gene3D:3.30.70.1800	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0016787
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS5D01G315900
EnsemblPlants:TraesCS5D01G315900.1	TIGR:cd00079	TIGR:cd00268	TIGR:cd12937	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:410057837..410061825

Molecular Weight (calculated)

75332.8 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.455

Length

700 amino acids

Sequence
(BLAST)

001: MPSIATIPEP MAVDDSASKK AKRKQLKAEA AAAAEAASSG KKDKKEKKDK KRKTKEPASS DEEGRSSTSS ESDRAPAAKK AKKEKKEKKD KKAKAEPAEE
101: PANDDGELTA SGEEEEPADP NALANFRISE KLKDKLKSKG INALFPIQAT TFALVLDGND LVGRARTGQG KTLAFVLPIL ESLVNGPHKA TRRTDYGRPP
201: SVLVLLPTRE LANQVHADFE FYGGTFGLST CCAYGGSPYR PQENALRQGV DIVVGTPGRV KDLIEKQKLN LRCLKFRVLD EADEMLNMGF KDDVELILGK
301: VEDVTKVQTL LFSATLPEWV KKLSMSFLKA DRKTVDLVGN EKMKASASVK HLALPCNKAA RSQIIPDIIK CYSHGGRTII FTETKESASE LSSLIPGSRA
401: LHGDIAQAQR EVVIAGFRSG KFLVLVATNV AARGLDINDV QLIIQCEPPR DVEAYIHRSG RTGRAGNTGI AVMLFEPRYK FGVTRIERES GVKFEHISAP
501: QPTDVAQSAG NEAAEAIASV SDSVIPVFRQ QAEELLSNSS MSAVDLLAKA LAKAVGYTDI KKRSLLSSME NHTTLHLQTG RPLYTPSFVI STLKRFMPED
601: RLSSLHGITL TTDGTSAVFD VPSAEVQDYI QGAENAAGVT IDEVKQLPAL QEREQSRGNS GGSRFGGRGG GGRRFGGGGG GRFGGGGRGR GGGGGRFNRR

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.