Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G241800.1 | Wheat | nucleus | 88.49 | 90.77 |
| TraesCS4D01G241400.1 | Wheat | nucleus | 88.08 | 87.53 |
| Zm00001d036620_P001 | Maize | nucleus | 60.46 | 64.65 |
| TraesCS3A01G064900.1 | Wheat | cytosol | 53.56 | 63.21 |
| Os06t0670400-00 | Rice | cytosol | 60.25 | 61.41 |
| PGSC0003DMT400056014 | Potato | cytosol | 23.01 | 61.11 |
| EER88795 | Sorghum | cytosol | 70.71 | 60.47 |
| Os06t0670500-01 | Rice | cytosol | 70.71 | 59.93 |
| TraesCS7A01G469800.1 | Wheat | nucleus | 70.08 | 59.93 |
| PGSC0003DMT400011164 | Potato | cytosol | 22.8 | 58.92 |
| PGSC0003DMT400011166 | Potato | nucleus | 33.26 | 54.45 |
| GSMUA_Achr10P... | Banana | cytosol | 62.55 | 53.97 |
| PGSC0003DMT400069100 | Potato | cytosol | 38.7 | 53.94 |
| AT1G53720.1 | Thale cress | nucleus | 55.23 | 52.17 |
| Bra030819.1-P | Field mustard | cytosol | 55.65 | 48.9 |
| Solyc07g066420.2.1 | Tomato | nucleus | 56.9 | 46.34 |
| CDY72459 | Canola | cytosol, extracellular, plastid | 11.09 | 45.3 |
| VIT_19s0027g01660.t01 | Wine grape | nucleus | 59.41 | 44.51 |
| KRH13056 | Soybean | nucleus | 58.79 | 44.39 |
| KRG93223 | Soybean | nucleus | 59.41 | 44.38 |
| TraesCS4A01G423000.1 | Wheat | cytosol | 14.23 | 42.5 |
| TraesCS7A01G066500.1 | Wheat | cytosol | 14.23 | 42.5 |
| TraesCS7A01G279300.1 | Wheat | cytosol, nucleus | 13.6 | 39.63 |
| CDY10512 | Canola | nucleus | 55.65 | 26.81 |
| TraesCS3A01G209000.1 | Wheat | nucleus | 21.13 | 20.4 |
| TraesCS4A01G045200.1 | Wheat | cytosol | 16.53 | 13.39 |
| TraesCS7A01G277700.1 | Wheat | cytosol | 13.81 | 10.19 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | Gene3D:3.30.70.330 | InterPro:CRIP | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
| InterPro:Cyclophilin-type_PPIase_dom | InterPro:Cyclophilin_PPIL4 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR002130 | InterPro:IPR012677 | InterPro:IPR029000 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00160 | PRINTS:PR00153 | PFscan:PS50072 | PFscan:PS50102 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF156 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF50891 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS4A01G064400 | EnsemblPlants:TraesCS4A01G064400.1 | TIGR:cd01921 | TIGR:cd12235 | SEG:seg | : |
Description
No Description!
Coordinates
chr4A:-:60974303..60975739
Molecular Weight (calculated)
54601.5 Da
IEP (calculated)
5.537
GRAVY (calculated)
-0.815
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLIVTSEG DLVVDLHTDQ CPRTTYNFLK LCKMKYYNGC LFHKVAKDFV AQTGDPTGTG AGGDSVYKFL HGDQARFFND EIHPELRHSK IGTVAMASAG
101: KNRNASQFYI TLRDDVEYLD DKHTVFGVVA EGEGLDTLTK INESYVDADG RPFKDIRIKH TYVLYDPDDD PAELAELVPP NSPIGKLIDE IGEERLEDTW
201: VPLDETVDPA QLEEMIRSKE AHTNAVILAS IGDIPDAEVK PPDNVLFVCQ LNPVTQDEDL YTIFSRFGTV TSAETIRDYK TGDSLCYAFV EFEAKEACER
301: AHRDMNNCLI DDRRIQVDFS QSVSKLWRQF RQGTRNASKD GCFKGHAPDY QARDLDKGFE KKNKDRDYVL KDENTQRGGS NRRSYDLVFD EDGASAGNKQ
401: DRRNGDRRKA QKLGDWRSEV PHKRDRDRNN REKLHTSKEG GRRRDDHISY DRSSDRSYSR RNNLSLFPSL YIPPYIYI
101: KNRNASQFYI TLRDDVEYLD DKHTVFGVVA EGEGLDTLTK INESYVDADG RPFKDIRIKH TYVLYDPDDD PAELAELVPP NSPIGKLIDE IGEERLEDTW
201: VPLDETVDPA QLEEMIRSKE AHTNAVILAS IGDIPDAEVK PPDNVLFVCQ LNPVTQDEDL YTIFSRFGTV TSAETIRDYK TGDSLCYAFV EFEAKEACER
301: AHRDMNNCLI DDRRIQVDFS QSVSKLWRQF RQGTRNASKD GCFKGHAPDY QARDLDKGFE KKNKDRDYVL KDENTQRGGS NRRSYDLVFD EDGASAGNKQ
401: DRRNGDRRKA QKLGDWRSEV PHKRDRDRNN REKLHTSKEG GRRRDDHISY DRSSDRSYSR RNNLSLFPSL YIPPYIYI
001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
Arabidopsis Description
CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.