CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91400
KRG92904
KRG95876
KRG95883
KRG99320
KRH06424
KRH28855
KRH35418
KRH38014
KRH40807
KRH42160
KRH42195
KRH45698
KRH47859
KRH58277
KRH58317
KRH67593
KRH67596
KRH76591

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	KRG92904	AT1G09140.1	16497658
AT1G53720.1	KRG99320	AT1G23860.1	16497658
AT1G53720.1	KRH45698	AT1G23860.1	16497658
AT1G53720.1	KRG95876	AT2G37340.1	16497658
AT1G53720.1	KRG95883	AT2G37340.1	16497658
AT1G53720.1	KRH42195	AT2G37340.1	16497658
AT1G53720.1	KRH58317	AT2G37340.1	16497658
AT1G53720.1	KRH67593	AT2G37340.1	16497658
AT1G53720.1	KRH67596	AT2G37340.1	16497658
AT1G53720.1	KRH38014	AT3G13570.1	16497658
AT1G53720.1	KRH06424	AT3G61860.1	16497658
AT1G53720.1	KRH47859	AT3G61860.1	16497658
AT1G53720.1	KRH28855	AT4G35800.1	16497658
AT1G53720.1	KRH40807	AT4G35800.1	16497658
AT1G53720.1	KRH76591	AT4G35800.1	16497658
AT1G53720.1	KRG91400	AT5G62190.1	16497658
AT1G53720.1	KRH35418	AT5G62190.1	16497658
AT1G53720.1	KRH42160	AT5G64200.2	16497658
AT1G53720.1	KRH58277	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13056	Soybean	nucleus	88.91	89.89
PGSC0003DMT400056014	Potato	cytosol	21.41	76.11
PGSC0003DMT400011164	Potato	cytosol	20.16	69.73
AT1G53720.1	Thale cress	nucleus	55.0	69.57
PGSC0003DMT400011166	Potato	nucleus	31.25	68.49
Solyc07g066420.2.1	Tomato	nucleus	61.25	66.78
VIT_19s0027g01660.t01	Wine grape	nucleus	66.56	66.77
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	21.25	66.02
PGSC0003DMT400069100	Potato	cytosol	35.0	65.31
Zm00001d036620_P001	Maize	nucleus	45.47	65.1
Bra030819.1-P	Field mustard	cytosol	55.16	64.89
HORVU1Hr1G015670.5	Barley	cytosol	24.38	64.46
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	24.22	64.32
TraesCS3D01G065600.1	Wheat	cytosol	32.66	62.57
HORVU7Hr1G107520.5	Barley	nucleus	52.5	60.11
TraesCS7D01G457200.1	Wheat	nucleus	52.19	59.75
TraesCS7A01G469800.1	Wheat	nucleus	52.19	59.75
Os06t0670500-01	Rice	cytosol	52.5	59.57
TraesCS7B01G371900.1	Wheat	nucleus	52.03	59.57
TraesCS4A01G064400.1	Wheat	nucleus	44.38	59.41
EER88795	Sorghum	cytosol	51.88	59.39
TraesCS4D01G241400.1	Wheat	nucleus	44.06	58.63
TraesCS4B01G241800.1	Wheat	nucleus	42.5	58.37
TraesCS3A01G064900.1	Wheat	cytosol	36.72	58.02
GSMUA_Achr10P...	Banana	cytosol	50.0	57.76
Os06t0670400-00	Rice	cytosol	42.19	57.57
CDY72459	Canola	cytosol, extracellular, plastid	9.69	52.99
KRH67956	Soybean	endoplasmic reticulum, nucleus	10.94	42.68
KRH76297	Soybean	cytosol	10.78	41.82
CDY10512	Canola	nucleus	57.03	36.79
KRG96215	Soybean	nucleus	10.94	31.67
KRH05304	Soybean	nucleus	16.56	21.5
KRH34786	Soybean	endoplasmic reticulum	5.94	16.38
KRG89165	Soybean	endoplasmic reticulum	5.78	16.09
KRH49483	Soybean	mitochondrion	5.62	16.0
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	6.09	13.36
KRH77127	Soybean	nucleus	12.19	13.07
KRH28354	Soybean	nucleus	12.19	13.07
KRH26593	Soybean	nucleus	10.0	10.39
KRH22711	Soybean	nucleus	10.0	10.39

Protein Annotations

EntrezGene:100776900	MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	EMBL:ACUP02011541	InterPro:CRIP
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	InterPro:Cyclophilin_PPIL4	EnsemblPlantsGene:GLYMA_19G004200	GO:GO:0000413
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:1901407	InterPro:IPR000504	InterPro:IPR001878
InterPro:IPR002130	InterPro:IPR012677	InterPro:IPR029000	UniProt:K7MVQ0	EnsemblPlants:KRG93223	ProteinID:KRG93223
ProteinID:KRG93223.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFAM:PF00160	PRINTS:PR00153
PFscan:PS50072	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928	UniParc:UPI000233F192
InterPro:Znf_CCHC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:338885..354769

Molecular Weight (calculated)

74703.8 Da

IEP (calculated)

6.394

GRAVY (calculated)

-1.367

Length

640 amino acids

Sequence
(BLAST)

001: MSVLIVTSLG DLVVDLHTNK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG TGGDSVYKFL YGDQARFFSD EIHIDLKHSK TGTVAMASAG
101: ENLNASQFYI TLRDDLDYLD GKHTVFGEVA EGFETLTRIN EAYVDEKGRP YKNIRIKHTY ILEDPYEDPS QLSVFIPDAS PEGKPKDEVD DEVRLEDDWV
201: PMDEQLNPAE LEEVIRSKEA HSRAVVLESI GDIPDAEIKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVS MAEIIRDHKT GDSLCYAFIE FEDKRSCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQYR RKDQKGKGGG CFKCGSTDHI AKDCTGDSTM KQPQAKYILK DDNAQRGGDN ARYEMVFDGD NSQSPRRDIK
401: HQWHDGDLVE RKDHRSRREQ DMVDSNNRDR YGDRSRGHGG NGDNKARSER GARDLGSHAD TKDRDRHMGR HGDDDYKRKD ECDSRKRDED DGYKRKDEQD
501: SRKRDEDDGY RERRTSRDDR RNMDSSHLER RNDRDYRKRP EDSGKQEMKM DSGRRKGSPV DEDYKNGRDD EDYKHRREER GHKRQDTKAD DDYKRRREDV
601: DYKRRREDGD YRHRRQERGH KRQDIVSDDY PHRRHHGDRR

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.