CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g01370.t01	Wine grape	cytosol	71.2	70.48
Solyc08g062700.2.1	Tomato	nucleus	69.78	69.92
CDX68936	Canola	nucleus	64.91	68.52
CDX75321	Canola	nucleus	67.75	67.89
Bra011410.1-P	Field mustard	nucleus	67.75	67.61
AT4G33060.1	Thale cress	nucleus	68.56	67.06
EES03161	Sorghum	nucleus	65.52	62.96
Os01t0582400-01	Rice	extracellular	61.26	60.52
TraesCS3A01G209000.1	Wheat	nucleus	60.65	60.4
TraesCS3B01G239300.1	Wheat	nucleus	60.45	59.6
TraesCS3D01G211900.1	Wheat	nucleus	59.84	59.12
Zm00001d044297_P002	Maize	nucleus	64.3	57.85
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	65.31	56.99
HORVU3Hr1G050400.5	Barley	cytosol, nucleus	42.6	53.71
KRH67956	Soybean	endoplasmic reticulum, nucleus	17.65	53.05
KRH76297	Soybean	cytosol	15.01	44.85
KRG96215	Soybean	nucleus	17.65	39.37
KRH34786	Soybean	endoplasmic reticulum	8.52	18.1
KRG89165	Soybean	endoplasmic reticulum	8.11	17.39
KRH49483	Soybean	mitochondrion	7.71	16.89
KRG93223	Soybean	nucleus	21.5	16.56
KRH28354	Soybean	nucleus	19.88	16.42
KRH13056	Soybean	nucleus	20.69	16.11
KRH77127	Soybean	nucleus	19.47	16.08
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	8.72	14.73
KRH22711	Soybean	nucleus	16.02	12.82
KRH26593	Soybean	nucleus	15.82	12.66

Protein Annotations

EntrezGene:100793148	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:ACJ61489.1	EMBL:ACUP02010724	ncoils:Coil
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_17G218800	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009506	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	UniProt:I1MX06	InterPro:IPR002130
InterPro:IPR029000	EnsemblPlants:KRH05304	ProteinID:KRH05304	ProteinID:KRH05304.1	PFAM:PF00160	PRINTS:PR00153
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF152	SUPFAM:SSF50891	UniParc:UPI000233E0CA	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:37027572..37033621

Molecular Weight (calculated)

55645.7 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.890

Length

493 amino acids

Sequence
(BLAST)

001: MSSVYVLEPP TKGKVVVNTT RGPLDIELWP KEAPKAARNF VQLCLENYYD NTIFHRIIKD FLVQSGDPTG TGTGGESIYG GVFADEFHSR LKFKHRGIVA
101: MANAGTLNSN GSQFFITLDR CDWLDRKHTI FGKVTGDTMY NLLRLGELET DKNDRPLDPP KILSVEVLWN PFEDIVPRTL QKLQIEAKAD TKNKESGKKG
201: VKKLNLLSFG EEAEEEEKEL ASVKQKIKSS HDVLNDPRLL KEDTLNNELS SSRRDMQLSV RDALNSKKDE PQKDSDAGSM ACLNFSDDDE ADFDARMRMQ
301: ILKKRKELGD LPPKPKLRNA GRSSPENHDT SSAARSNAVS VDEDQPKVEK LSLKKKGVGS EARAERMSNA DADLQLLNQA ERGRQLQKQK KRRLQGREDE
401: VLAKLEKFKN SLSAKATPPT DESEDVSNEE LSDWKGVSLK FAPQTGKDRM SRNEDPNDYV VHDPLLEKGK EKFNRMIAKQ KRREREWAGS SLT

Best Arabidopsis Sequence Match ( AT4G33060.1 )
(BLAST)

001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA

Arabidopsis Description

CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.