CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67956	Soybean	endoplasmic reticulum, nucleus	72.4	97.56
VIT_08s0007g02900.t01	Wine grape	cytosol	67.87	90.36
EES14084	Sorghum	cytosol	65.16	87.8
GSMUA_Achr8P32900_001	Banana	cytosol	65.16	87.8
Solyc09g010190.2.1	Tomato	nucleus	65.16	87.8
PGSC0003DMT400022853	Potato	cytosol	65.16	87.8
Os08t0559400-01	Rice	cytosol, nucleus	65.16	87.8
TraesCS7D01G279100.1	Wheat	cytosol	64.71	87.2
TraesCS7B01G180900.1	Wheat	cytosol	64.71	87.2
Bra005297.1-P	Field mustard	cytosol	64.25	86.59
CDX75068	Canola	cytosol	64.25	86.59
CDX84155	Canola	cytosol	64.25	86.59
AT2G36130.1	Thale cress	cytosol	63.8	85.98
TraesCS7A01G279300.1	Wheat	cytosol, nucleus	63.35	85.37
HORVU7Hr1G059320.3	Barley	plastid	66.52	73.13
Zm00001d031937_P001	Maize	cytosol	57.01	72.41
KRH76297	Soybean	cytosol	34.39	46.06
KRG89165	Soybean	endoplasmic reticulum	21.27	20.43
KRH34786	Soybean	endoplasmic reticulum	21.27	20.26
KRH49483	Soybean	mitochondrion	19.91	19.56
KRH05304	Soybean	nucleus	39.37	17.65
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	21.72	16.44
KRH22711	Soybean	nucleus	37.1	13.31
KRH28354	Soybean	nucleus	35.75	13.23
KRH26593	Soybean	nucleus	36.65	13.15
KRH77127	Soybean	nucleus	34.84	12.9
KRH13056	Soybean	nucleus	31.67	11.06
KRG93223	Soybean	nucleus	31.67	10.94

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02012147	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_19G196100	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:K7MZ99	EnsemblPlants:KRG96215	ProteinID:KRG96215
ProteinID:KRG96215.1	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF213	SUPFAM:SSF50891	UniParc:UPI000295D9B0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:45334164..45337145

Molecular Weight (calculated)

24926.1 Da

IEP (calculated)

9.943

GRAVY (calculated)

-0.496

Length

221 amino acids

Sequence
(BLAST)

001: MRGKRKTCNV EDFQFYMSKP MCKARPGQAQ LNGLLFCSYI RYERQGRSVW CVSKIKMWAS AAEGGAPEVT LETSMGSFTF ELYYKHAPRT CRNFIELSRR
101: GYYDNVKFHR IIKDFIVQGG DPTGTGRGGE SIYGAKFEDE IKRELKHTGA GILSMANAGP NTNGSQFFIT LAPCPSLDGK HTIFGRVCRG MEIMKRLGSI
201: QTDNNDRPIH NVKILRTSVK D

Best Arabidopsis Sequence Match ( AT2G36130.1 )
(BLAST)

001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID

Arabidopsis Description

CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.