Factsheet for GSMUA_Achr8P32900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67956	Soybean	endoplasmic reticulum, nucleus	90.24	90.24
VIT_08s0007g02900.t01	Wine grape	cytosol	90.85	89.76
EES14084	Sorghum	cytosol	89.63	89.63
Os08t0559400-01	Rice	cytosol, nucleus	89.63	89.63
TraesCS7D01G279100.1	Wheat	cytosol	87.8	87.8
Bra005297.1-P	Field mustard	cytosol	86.59	86.59
CDX75068	Canola	cytosol	86.59	86.59
CDX84155	Canola	cytosol	86.59	86.59
TraesCS7B01G180900.1	Wheat	cytosol	86.59	86.59
TraesCS7A01G279300.1	Wheat	cytosol, nucleus	86.59	86.59
Solyc09g010190.2.1	Tomato	nucleus	86.59	86.59
PGSC0003DMT400022853	Potato	cytosol	86.59	86.59
AT2G36130.1	Thale cress	cytosol	85.37	85.37
Zm00001d031937_P001	Maize	cytosol	78.05	73.56
HORVU7Hr1G059320.3	Barley	plastid	87.8	71.64
KRG96215	Soybean	nucleus	87.8	65.16
GSMUA_Achr10P...	Banana	endoplasmic reticulum	26.22	18.38
GSMUA_Achr5P15930_001	Banana	mitochondrion	25.0	17.52
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	47.56	13.81
GSMUA_Achr1P17040_001	Banana	cytosol	48.17	12.62
GSMUA_Achr10P...	Banana	cytosol	41.46	12.27
GSMUA_Achr1P22460_001	Banana	cytosol	42.68	11.76

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G32900_001	EnsemblPlants:GSMUA_Achr8P32900_001
EnsemblPlants:GSMUA_Achr8T32900_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0TVP2	PFAM:PF00160	PIRSF:PIRSF001467
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SUPFAM:SSF50891
UniParc:UPI0002964F0C	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32900_001]

Coordinates

chr8:+:34123921..34127869

Molecular Weight (calculated)

18078.6 Da

IEP (calculated)

7.556

GRAVY (calculated)

-0.448

Length

164 amino acids

Sequence
(BLAST)

001: MWGSADGGAP EVTLETSMGP LTVEMYYKHT PKTCRNFVEL SRRGYYDDVK FHRIIKDFIV QGGDPTGTGR GGESIYGPKF EDEIRPELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPCQSL DGKHTIFGRV CSGMEVIKRL GSVQTDNNDR PIHDVKILRT IVKD

Best Arabidopsis Sequence Match ( AT2G36130.1 )
(BLAST)

001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID

Arabidopsis Description

CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.