Factsheet for Os08t0559400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14084	Sorghum	cytosol	92.68	92.68
TraesCS7A01G279300.1	Wheat	cytosol, nucleus	92.07	92.07
TraesCS7D01G279100.1	Wheat	cytosol	91.46	91.46
TraesCS7B01G180900.1	Wheat	cytosol	90.24	90.24
GSMUA_Achr8P32900_001	Banana	cytosol	89.63	89.63
VIT_08s0007g02900.t01	Wine grape	cytosol	89.63	88.55
KRH67956	Soybean	endoplasmic reticulum, nucleus	88.41	88.41
Solyc09g010190.2.1	Tomato	nucleus	85.98	85.98
PGSC0003DMT400022853	Potato	cytosol	85.98	85.98
Bra005297.1-P	Field mustard	cytosol	84.15	84.15
CDX75068	Canola	cytosol	84.15	84.15
CDX84155	Canola	cytosol	84.15	84.15
AT2G36130.1	Thale cress	cytosol	84.15	84.15
Zm00001d031937_P001	Maize	cytosol	82.32	77.59
HORVU7Hr1G059320.3	Barley	plastid	92.07	75.12
KRG96215	Soybean	nucleus	87.8	65.16
Os06t0130500-01	Rice	cytosol	47.56	48.75
Os07t0476500-01	Rice	mitochondrion	26.22	18.3
Os01t0582400-01	Rice	extracellular	47.56	15.63
Os06t0670400-00	Rice	cytosol	41.46	14.5
Os06t0670500-01	Rice	cytosol	41.46	12.06
Os03t0201100-01	Rice	cytosol	0.61	0.67
Os08t0557500-01	Rice	cytosol	1.83	0.6

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:4346316	EMBL:AB067654	ProteinID:BAB62329.1	ProteinID:BAD13138.1
ProteinID:BAF24416.1	ProteinID:BAT06687.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
ProteinID:EAZ43652.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	EMBL:KX434727	EnsemblPlantsGene:Os08g0559400	EnsemblPlants:Os08t0559400-01	PFAM:PF00160	PIRSF:PIRSF001467
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF213	UniProt:Q93VG0
SUPFAM:SSF50891	UniParc:UPI00000AB570	RefSeq:XP_015649749.1	SEG:seg	:	:

Description

CYCLOPHILIN 18-2Similar to Cyclophilin-like protein. (Os08t0559400-01)

Coordinates

chr8:-:27999844..28002323

Molecular Weight (calculated)

18084.7 Da

IEP (calculated)

8.687

GRAVY (calculated)

-0.389

Length

164 amino acids

Sequence
(BLAST)

001: MWGSADGGTP EVTLETSMGA FTIEMYYKHA PKTCRNFLEL SRRGYYDNVI FHRIIKDFIV QGGDPTGTGR GGESIYGAKF EDEIRPELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPCQSL DGKHTIFGRV SKGMEIVKRL GSVQTDKSDR PIHEVKILRT VVKD

Best Arabidopsis Sequence Match ( AT2G36130.1 )
(BLAST)

001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID

Arabidopsis Description

CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.