Factsheet for Solyc09g010190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022853	Potato	cytosol	100.0	100.0
KRH67956	Soybean	endoplasmic reticulum, nucleus	89.02	89.02
VIT_08s0007g02900.t01	Wine grape	cytosol	89.63	88.55
GSMUA_Achr8P32900_001	Banana	cytosol	86.59	86.59
EES14084	Sorghum	cytosol	85.98	85.98
Os08t0559400-01	Rice	cytosol, nucleus	85.98	85.98
Bra005297.1-P	Field mustard	cytosol	84.76	84.76
CDX75068	Canola	cytosol	84.76	84.76
CDX84155	Canola	cytosol	84.76	84.76
TraesCS7D01G279100.1	Wheat	cytosol	84.76	84.76
AT2G36130.1	Thale cress	cytosol	84.15	84.15
TraesCS7B01G180900.1	Wheat	cytosol	84.15	84.15
TraesCS7A01G279300.1	Wheat	cytosol, nucleus	83.54	83.54
Zm00001d031937_P001	Maize	cytosol	75.0	70.69
HORVU7Hr1G059320.3	Barley	plastid	84.76	69.15
KRG96215	Soybean	nucleus	87.8	65.16
Solyc08g006090.2.1	Tomato	cytosol, nucleus	45.73	46.88
Solyc12g089200.1.1	Tomato	nucleus	21.34	46.67
Solyc12g038030.1.1	Tomato	cytosol	20.73	36.56
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	13.41	36.07
Solyc02g061800.2.1	Tomato	cytosol	41.46	23.21
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	21.95	22.78
Solyc12g038150.1.1	Tomato	nucleus	20.12	20.0
Solyc10g083930.1.1	Tomato	nucleus	28.05	20.0
Solyc12g038010.1.1	Tomato	mitochondrion	23.17	19.29
Solyc09g008410.2.1	Tomato	plastid	26.83	18.64
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	40.85	17.54
Solyc08g062700.2.1	Tomato	nucleus	45.73	15.24
Solyc12g038000.1.1	Tomato	nucleus	19.51	14.95
Solyc11g067090.1.1	Tomato	cytosol, nucleus	49.39	13.02
Solyc02g092380.2.1	Tomato	nucleus	44.51	12.25
Solyc07g066420.2.1	Tomato	nucleus	42.07	11.75
Solyc12g038120.1.1	Tomato	nucleus	2.44	1.87
Solyc12g038020.1.1	Tomato	cytosol	1.22	1.18

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	UniProt:K4CR47	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF213	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc09g010190.2	EnsemblPlants:Solyc09g010190.2.1
UniParc:UPI000276CAF1	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:Projected from Arabidopsis thaliana (AT2G36130) UniProtKB/Swiss-Prot;Acc:Q9SIH1]

Coordinates

chr9:-:3581547..3586678

Molecular Weight (calculated)

18176.7 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.493

Length

164 amino acids

Sequence
(BLAST)

001: MWPSAEGGPP EVTLETSMGS LTLEMYYKQA PRTCRNFIEL ARRGYYDNVK FHRIIKDFIV QGGDPTGTGR GGESIYGQKF EDEINPQLKH TGAGIISMAN
101: AGPNTNGSQF FITLAPAQSL DGKHTIFGRV CRGMEIVKRL GSVQTDNTDR PIHDVRILRT TVKD

Best Arabidopsis Sequence Match ( AT2G36130.1 )
(BLAST)

001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID

Arabidopsis Description

CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.