Factsheet for Solyc12g038000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g061800.2.1	Tomato	cytosol	71.03	51.88
Solyc12g038030.1.1	Tomato	cytosol	22.43	51.61
Solyc12g038010.1.1	Tomato	mitochondrion	42.06	45.69
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	30.84	41.77
PGSC0003DMT400069100	Potato	cytosol	66.36	41.4
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	73.83	41.36
Solyc12g089200.1.1	Tomato	nucleus	14.02	40.0
Solyc12g038120.1.1	Tomato	nucleus	36.92	36.92
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	9.81	34.43
Solyc12g038150.1.1	Tomato	nucleus	23.83	30.91
Solyc12g038020.1.1	Tomato	cytosol	23.83	30.0
Solyc07g066420.2.1	Tomato	nucleus	66.36	24.19
Solyc08g006090.2.1	Tomato	cytosol, nucleus	15.42	20.62
Solyc09g010190.2.1	Tomato	nucleus	14.95	19.51
Solyc10g083930.1.1	Tomato	nucleus	11.21	10.43
Solyc09g008410.2.1	Tomato	plastid	11.21	10.17
Solyc08g062700.2.1	Tomato	nucleus	21.03	9.15
Solyc02g092380.2.1	Tomato	nucleus	16.36	5.87
Solyc11g067090.1.1	Tomato	cytosol, nucleus	14.02	4.82

Protein Annotations

Gene3D:2.40.100.10	Gene3D:3.30.70.330	MapMan:35.1	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:1901407	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR029000
UniProt:K4DEF5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156
InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF50891	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc12g038000.1	EnsemblPlants:Solyc12g038000.1.1
UniParc:UPI000276A332	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:49574555..49575486

Molecular Weight (calculated)

24487.1 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.510

Length

214 amino acids

Sequence
(BLAST)

001: MSVMIMTSLG DIIVDLFTGH HSMPFNMQKL SEVMQDKHSK RGTVSTASVD TGTGEKNLYA SQFYITLRDD LDSLDGVMNM INEAYVDDKG KHYQNIRIKH
101: TYILYDPFQL AGLIPDASPK RKPKDEIDDD LLLEDDWMPK DEELGVGEEK ESHSQRGSIV LIFSRFGTVT SAKIIRDHKI GDSHCNALIE FEDKESCEQA
201: YFKMDKSKIA LWRW

Best Arabidopsis Sequence Match ( AT1G53720.2 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGK SFFFSPPYGI SDLL

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.