Factsheet for Solyc10g083930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
endoplasmic reticulum 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072698	Potato	mitochondrion, plastid	93.91	93.91
Solyc09g008410.2.1	Tomato	plastid	79.57	77.54
KRH34786	Soybean	endoplasmic reticulum	60.87	60.34
KRH49483	Soybean	mitochondrion	57.39	58.67
KRG89165	Soybean	endoplasmic reticulum	56.96	56.96
GSMUA_Achr10P...	Banana	endoplasmic reticulum	56.96	55.98
GSMUA_Achr5P15930_001	Banana	mitochondrion	56.52	55.56
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	55.65	54.7
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	54.78	53.85
AT3G66654.3	Thale cress	plastid	54.78	53.39
Bra029595.1-P	Field mustard	mitochondrion, plastid	53.91	52.54
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	63.48	51.59
Zm00001d021332_P002	Maize	mitochondrion	51.3	50.64
KXG36207	Sorghum	mitochondrion	51.3	50.64
Os07t0476500-01	Rice	mitochondrion	50.87	49.79
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	60.43	47.6
TraesCS2D01G237600.1	Wheat	mitochondrion	47.39	46.78
TraesCS2B01G255000.1	Wheat	mitochondrion	47.39	46.78
HORVU2Hr1G054470.1	Barley	plastid	39.57	35.69
Solyc08g006090.2.1	Tomato	cytosol, nucleus	20.0	28.75
Solyc09g010190.2.1	Tomato	nucleus	20.0	28.05
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	6.09	22.95
Solyc12g038030.1.1	Tomato	cytosol	9.13	22.58
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	11.3	16.46
Solyc12g089200.1.1	Tomato	nucleus	4.35	13.33
Solyc02g061800.2.1	Tomato	cytosol	15.22	11.95
Solyc12g038000.1.1	Tomato	nucleus	10.43	11.21
Solyc11g067090.1.1	Tomato	cytosol, nucleus	28.7	10.61
Solyc12g038010.1.1	Tomato	mitochondrion	8.26	9.64
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	14.35	8.64
Solyc02g092380.2.1	Tomato	nucleus	22.17	8.56
Solyc08g062700.2.1	Tomato	nucleus	16.52	7.72
Solyc12g038150.1.1	Tomato	nucleus	4.78	6.67
Solyc07g066420.2.1	Tomato	nucleus	14.35	5.62
Solyc12g038120.1.1	Tomato	nucleus	0.43	0.47
Solyc12g038020.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	UniProt:K4D3H9	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc10g083930.1	EnsemblPlants:Solyc10g083930.1.1
TMHMM:TMhelix	UniParc:UPI000276A0C2	SEG:seg	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:K4D3H9]

Coordinates

chr10:-:63633089..63636631

Molecular Weight (calculated)

26057.3 Da

IEP (calculated)

9.872

GRAVY (calculated)

-0.380

Length

230 amino acids

Sequence
(BLAST)

001: MARIKPQALL LQSKKKKAPS GVSVPTIIVY ILIVAVMVFS LFSTYKYWSR RSILQTQDGI SNRKFIERKK SDIPNYALIS TSKGQITVEL YKDGSPDIVN
101: EFIDFSQKGH FKGMQFTRVV KNFVIQGSKI ENSEATEDWT SRGKHYSQLN TSLKHEAFML GTSKATHEGG GFDLFITTAP IPDLNDKINI FGRVIKGEDV
201: VQEIEEVDTD DHYRPKTPVQ INEVTLKHKT

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.