Factsheet for Solyc09g008410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 4
endoplasmic reticulum 1
cytosol 2
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009946	Potato	mitochondrion	96.61	96.61
Solyc10g083930.1.1	Tomato	nucleus	77.54	79.57
KRH34786	Soybean	endoplasmic reticulum	63.14	64.22
KRH49483	Soybean	mitochondrion	60.59	63.56
KRG89165	Soybean	endoplasmic reticulum	59.75	61.3
GSMUA_Achr5P15930_001	Banana	mitochondrion	59.32	59.83
GSMUA_Achr10P...	Banana	endoplasmic reticulum	57.63	58.12
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	56.36	56.84
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	56.36	56.84
AT3G66654.3	Thale cress	plastid	56.78	56.78
Bra029595.1-P	Field mustard	mitochondrion, plastid	54.24	54.24
Zm00001d021332_P002	Maize	mitochondrion	52.12	52.79
KXG36207	Sorghum	mitochondrion	51.69	52.36
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	62.71	52.3
Os07t0476500-01	Rice	mitochondrion	51.69	51.91
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	62.29	50.34
TraesCS2D01G237600.1	Wheat	mitochondrion	48.73	49.36
TraesCS2B01G255000.1	Wheat	mitochondrion	48.31	48.93
HORVU2Hr1G054470.1	Barley	plastid	38.98	36.08
Solyc08g006090.2.1	Tomato	cytosol, nucleus	19.49	28.75
Solyc09g010190.2.1	Tomato	nucleus	18.64	26.83
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	5.93	22.95
Solyc12g038030.1.1	Tomato	cytosol	8.47	21.51
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	10.59	15.82
Solyc12g089200.1.1	Tomato	nucleus	3.81	12.0
Solyc02g061800.2.1	Tomato	cytosol	14.41	11.6
Solyc12g038000.1.1	Tomato	nucleus	10.17	11.21
Solyc11g067090.1.1	Tomato	cytosol, nucleus	28.39	10.77
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	14.83	9.16
Solyc02g092380.2.1	Tomato	nucleus	22.03	8.72
Solyc12g038010.1.1	Tomato	mitochondrion	7.2	8.63
Solyc08g062700.2.1	Tomato	nucleus	16.1	7.72
Solyc07g066420.2.1	Tomato	nucleus	14.41	5.79
Solyc12g038150.1.1	Tomato	nucleus	3.81	5.45
Solyc12g038020.1.1	Tomato	cytosol	0.0	0.0
Solyc12g038120.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	UniProt:K4CQM9	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc09g008410.2	EnsemblPlants:Solyc09g008410.2.1
TMHMM:TMhelix	UniParc:UPI000276BEF5	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:K4CQM9]

Coordinates

chr9:-:1861145..1869636

Molecular Weight (calculated)

26883.1 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.432

Length

236 amino acids

Sequence
(BLAST)

001: MAKIKPQALL LQSKKKKGPS GISVPTIILY GLIVAVMVFF LFATYRHWSR RSMIQTRDEL STTEDENTFI EHKRSDVNGP TYASITTSKG LIIVELYKDG
101: SPDIVDEFVD FCQKGHFKGM RFNRVIKHFV IHGSKVDKPE GTEDWTSRGK HYSRLDTSLK HEAFMLGTSK TNHEGEGFDL FITTAPIPDL NDKINVFGRV
201: IKGEDIVQEI EEVDTDDHYR PKTPVQINEV TLKYST

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.