Factsheet for PGSC0003DMT400009946

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
endoplasmic reticulum 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008410.2.1	Tomato	plastid	96.61	96.61
PGSC0003DMT400072698	Potato	mitochondrion, plastid	78.81	80.87
KRH34786	Soybean	endoplasmic reticulum	62.29	63.36
KRH49483	Soybean	mitochondrion	58.9	61.78
KRG89165	Soybean	endoplasmic reticulum	58.05	59.57
GSMUA_Achr5P15930_001	Banana	mitochondrion	58.9	59.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.05	58.55
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	55.51	55.98
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	55.51	55.98
AT3G66654.3	Thale cress	plastid	55.93	55.93
Bra029595.1-P	Field mustard	mitochondrion, plastid	53.39	53.39
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	63.14	52.65
Zm00001d021332_P002	Maize	mitochondrion	51.69	52.36
Os07t0476500-01	Rice	mitochondrion	52.12	52.34
KXG36207	Sorghum	mitochondrion	51.27	51.93
TraesCS2D01G237600.1	Wheat	mitochondrion	49.15	49.79
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	61.44	49.66
TraesCS2B01G255000.1	Wheat	mitochondrion	48.73	49.36
HORVU2Hr1G054470.1	Barley	plastid	39.83	36.86
PGSC0003DMT400038471	Potato	cytosol	19.92	29.38
PGSC0003DMT400022853	Potato	cytosol	19.07	27.44
PGSC0003DMT400019171	Potato	cytosol	28.39	10.79
PGSC0003DMT400056014	Potato	cytosol	7.63	10.0
PGSC0003DMT400055240	Potato	cytosol	22.46	8.89
PGSC0003DMT400011164	Potato	cytosol	5.08	6.49
PGSC0003DMT400011166	Potato	nucleus	7.2	5.82
PGSC0003DMT400069100	Potato	cytosol	8.05	5.54
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	2.12	2.59

Protein Annotations

EntrezGene:102582418	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0ZX65	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400003896
PGSC:PGSC0003DMG400003896	EnsemblPlants:PGSC0003DMT400009946	PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI0002949CEB	RefSeq:XP_006354385.1	:

Description

Peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003896]

Coordinates

chr9:+:4881150..4889479

Molecular Weight (calculated)

26671.9 Da

IEP (calculated)

7.845

GRAVY (calculated)

-0.412

Length

236 amino acids

Sequence
(BLAST)

001: MAKIKPQALL LQSKKKKGPS GISVPTIILY GLIVAVMVFF LFATYRHWSR RSMIQTQDDL SSTEGESTFI EHKRSDVNGP TYASITTSKG LITVELYKDG
101: SPDIVEEFVD FCQKGHFKGM RFNRVIKHFV IHGSKVDKPE GTEDWTSRGK HYSRLDTSLK HEAFMLGTSK TNHEGGGFDL FITTAPIPDL NDKINVFGRV
201: IKGEDIVQEI EEVDTDDHYR PKTPVQINEV TLKYST

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.