Factsheet for PGSC0003DMT400055240

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400025653
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	PGSC0003DMT400025653	AT1G20630.1	21798944
AT5G67530.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT5G67530.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092380.2.1	Tomato	nucleus	97.99	97.99
VIT_00s0513g00020.t01	Wine grape	cytosol	44.97	80.97
KRH28354	Soybean	nucleus	81.04	80.9
KRH77127	Soybean	nucleus	80.7	80.57
VIT_07s0129g00040.t01	Wine grape	cytosol	80.54	80.4
GSMUA_Achr1P22460_001	Banana	cytosol	77.52	77.65
EER92686	Sorghum	cytosol	76.01	76.65
AT5G67530.1	Thale cress	cytosol	76.34	76.47
HORVU4Hr1G070330.9	Barley	cytosol	74.5	75.25
TraesCS4D01G259800.1	Wheat	cytosol	74.16	74.79
TraesCS4B01G260100.1	Wheat	cytosol	73.99	74.75
CDY36499	Canola	cytosol	74.83	74.71
TraesCS4A01G045200.1	Wheat	cytosol	73.83	74.58
CDY08725	Canola	cytosol	74.5	74.37
Bra024442.1-P	Field mustard	cytosol	74.5	74.37
Os03t0201100-01	Rice	cytosol	18.29	73.15
Zm00001d028109_P006	Maize	cytosol	75.84	67.97
PGSC0003DMT400038471	Potato	cytosol	15.1	56.25
PGSC0003DMT400022853	Potato	cytosol	12.25	44.51
PGSC0003DMT400056014	Potato	cytosol	8.56	28.33
PGSC0003DMT400072698	Potato	mitochondrion, plastid	8.89	23.04
PGSC0003DMT400009946	Potato	mitochondrion	8.89	22.46
PGSC0003DMT400019171	Potato	cytosol	22.65	21.74
PGSC0003DMT400069100	Potato	cytosol	9.9	17.2
PGSC0003DMT400011164	Potato	cytosol	4.03	12.97
PGSC0003DMT400011166	Potato	nucleus	5.54	11.3
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	2.35	7.25

Protein Annotations

EntrezGene:102593973	MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0004842	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR029000	UniProt:M1BXM6	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400021445	PGSC:PGSC0003DMG400021445
EnsemblPlants:PGSC0003DMT400055240	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS51698	PANTHER:PTHR11071
PANTHER:PTHR11071:SF147	SMART:SM00504	SUPFAM:SSF50891	SUPFAM:SSF57850	UniParc:UPI0002950870	InterPro:Ubox_domain
RefSeq:XP_006363829.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Cyclophilin-10 [Source:PGSC_GENE;Acc:PGSC0003DMG400021445]

Coordinates

chr2:-:42732751..42739079

Molecular Weight (calculated)

65980.9 Da

IEP (calculated)

7.842

GRAVY (calculated)

-0.581

Length

596 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEL KTPFKRLPFY CCALTFTPFE DPVCTKDGNV FEIMRIVPYI RKYGRNPVTG APMKQEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVR TTGNVFCYEA VKELNIKTKN WKELLTDEAF SREDLITIQN PNALDTKVLL DFDHVKKSLK VDDEEIQKMQ SDPTYNINIT
201: GDIKQMLKEL GSEKAKEIAL HGGGGNKAQN ERAAALEAIL AARSRIKDDA KTKENGEGTA KQTFSIVDAA SASVHGRSAA AAKAGSTDKT AARIALHMAG
301: ERTPVNAKLV KSRFTTGAAS RSFTSTSYDP VTKNEYEYVK VEKNPKKKGY VQLHTTHGDL NIELHCDITP RACENFITLC EQGYYNGVAF HRNIRNFMIQ
401: GGDPTGTGKG GESIWGKPFK DEVHSKLLHS GRGVVSMANS GPHSNGSQFF ILYKSATHLN FKHTVFGMVV GGLPTLSTME KVPVDDDDRP LEEIKIISVE
501: VYVNPYAELD EEEEKTNDDN KTEDEDNEKV GSWYSNPGTG TSDIQAVGSG IGKYLKARAA QADSKTSSDS SLPPIYAAKK RKTGTSTAEL KDFSAW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.