Factsheet for Zm00001d028109_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92686	Sorghum	cytosol	86.77	97.63
HORVU4Hr1G070330.9	Barley	cytosol	77.89	87.8
TraesCS4B01G260100.1	Wheat	cytosol	77.74	87.63
TraesCS4D01G259800.1	Wheat	cytosol	77.74	87.48
TraesCS4A01G045200.1	Wheat	cytosol	77.14	86.95
Os03t0201100-01	Rice	cytosol	19.4	86.58
KRH28354	Soybean	nucleus	70.08	78.06
GSMUA_Achr1P22460_001	Banana	cytosol	69.47	77.65
KRH77127	Soybean	nucleus	69.62	77.55
VIT_07s0129g00040.t01	Wine grape	cytosol	68.27	76.05
PGSC0003DMT400055240	Potato	cytosol	67.97	75.84
Solyc02g092380.2.1	Tomato	nucleus	67.97	75.84
VIT_00s0513g00020.t01	Wine grape	cytosol	37.29	74.92
CDY36499	Canola	cytosol	66.47	74.04
CDY08725	Canola	cytosol	66.17	73.7
Bra024442.1-P	Field mustard	cytosol	66.02	73.53
AT5G67530.1	Thale cress	cytosol	65.71	73.45
Zm00001d036035_P001	Maize	cytosol	13.23	55.0
Zm00001d031937_P001	Maize	cytosol	9.32	35.63
Zm00001d021332_P002	Maize	mitochondrion	7.67	21.89
Zm00001d049958_P002	Maize	cytosol	21.2	21.01
Zm00001d044297_P002	Maize	nucleus	14.29	17.34
Zm00001d036620_P001	Maize	nucleus	11.28	16.78

Protein Annotations

EntrezGene:103632256	MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	UniProt:A0A1D6JS45	ncoils:Coil
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0004842	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR029000	ProteinID:ONL94737.1	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS51698	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147
SMART:SM00504	SUPFAM:SSF50891	SUPFAM:SSF57850	UniParc:UPI0008432E81	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d028109
EnsemblPlants:Zm00001d028109_P006	EnsemblPlants:Zm00001d028109_T006	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP65

Coordinates

chr1:+:23110479..23114096

Molecular Weight (calculated)

73461.2 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.453

Length

665 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITRTEWAT EWGGAKQKDV GTPFKRLPFY CCSLTFLPFE DPVCTVDGSV FDLMSIIPYL KKFGKHPVTG APLKHEDLIP LTFHKNSDGE
101: LNLGYENTNT IIPACTKSIC YGSYVFHQSG LYIHFIINQS YFLAGEFQCP VLNKVFTEFT HIVAVKTTGN VFCYEAIQEL NIKPKNWKEL LTDEPFTRND
201: LITIQNPNVV DGKVLGEFDH VKKGLKLEDE ELQRMKDDPT YNINISGDLK QMIKELGTEK GNEAFLQGGG GLKAQKERAA ALAAILARKE KDDSKAGKEP
301: KPNQSFSIVD AASASVHGRS AAAAKATSAE KTAARIAMHM AGERAPVNAK LVYSHPVFMC YAVPSLPVHQ CCLMVSIQPF QVKSRYTTGA ASRSFTSTSY
401: DPVTKNEYEY VKVERNPKKK GYVQLHTTHG DLNLELHCDI TPRTCENFLT HCENGYYNGL IFHRSIKNFM IQGGDPTGTG SGGESIWGKP FKDEPNSKLL
501: HSGRGVVSMA NSGPHTNGSQ FFILYKSAPH LNYKHTVFGM VVGGLTTLST MERVPVDDDD RPMEEIKILK VSIFVNPYTE PDEEEEKAKE EKKKDEDYDK
601: VGSWYSNPGT GVAGSTSTGG GVGKYLKARA AGSIDVTGSA GVADDSSKKR KATASSVEFK DFSGW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.