CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01363
CDY04768
CDY21400
CDY25761
CDY29518
CDY31490
CDY31877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	CDY01363	AT1G20630.1	21798944
AT5G67530.1	CDY29518	AT1G20630.1	21798944
AT5G67530.1	CDY31490	AT1G20630.1	21798944
AT5G67530.1	CDY31877	AT1G20630.1	21798944
AT5G67530.1	CDY04768	AT1G22920.1	21798944
AT5G67530.1	CDY21400	AT1G22920.1	21798944
AT5G67530.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08725	Canola	cytosol	99.0	99.0
AT5G67530.1	Thale cress	cytosol	92.13	92.44
Os03t0201100-01	Rice	cytosol	19.77	79.19
KRH28354	Soybean	nucleus	76.55	76.55
KRH77127	Soybean	nucleus	76.38	76.38
VIT_07s0129g00040.t01	Wine grape	cytosol	75.88	75.88
EER92686	Sorghum	cytosol	74.54	75.3
Solyc02g092380.2.1	Tomato	nucleus	75.04	75.17
PGSC0003DMT400055240	Potato	cytosol	74.71	74.83
VIT_00s0513g00020.t01	Wine grape	cytosol	40.87	73.72
GSMUA_Achr1P22460_001	Banana	cytosol	73.2	73.45
TraesCS4B01G260100.1	Wheat	cytosol	72.53	73.39
TraesCS4A01G045200.1	Wheat	cytosol	72.36	73.22
TraesCS4D01G259800.1	Wheat	cytosol	72.36	73.1
HORVU4Hr1G070330.9	Barley	cytosol	72.19	73.05
Zm00001d028109_P006	Maize	cytosol	74.04	66.47
CDX84155	Canola	cytosol	12.56	45.73
CDX75068	Canola	cytosol	12.56	45.73
CDY38037	Canola	mitochondrion, plastid	14.07	43.52
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	5.53	35.11
CDY72459	Canola	cytosol, extracellular, plastid	5.53	28.21
CDX83335	Canola	mitochondrion, plastid	8.71	22.51
CDY08708	Canola	cytosol	21.61	20.74
CDX99192	Canola	cytosol	21.61	20.74
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	8.04	20.51
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	8.04	20.51
CDX68936	Canola	nucleus	15.24	19.49
CDX75321	Canola	nucleus	15.24	18.5
CDY10512	Canola	nucleus	13.23	7.96
CDY69933	Canola	cytosol, nucleus	1.51	4.25

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	GO:A0A078HGG8	UniProt:A0A078HGG8	EnsemblPlants:CDY36499
ProteinID:CDY36499	ProteinID:CDY36499.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0004842	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00062168001	InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR029000	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS51698
PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SMART:SM00504	SUPFAM:SSF50891	SUPFAM:SSF57850	UniPathway:UPA00143
UniParc:UPI0004EEE8F9	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC03g48580DBnaC03g48580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGG8]

Coordinates

chrLK032377:+:279231..282097

Molecular Weight (calculated)

65058.5 Da

IEP (calculated)

7.642

GRAVY (calculated)

-0.536

Length

597 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPFY CCALTFLPFE DPVCTTDGSV FELTTIVPYI RKFGKHPVTG APLEGDDLIP LVFHKNSEGE
101: FHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDSKITV EFDHVKNGLK LEDEELKKMN SDPAYNINAS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKESS KADEPKQTYS VVDAASASVH GRSAAAAKAG SSDKTAARIA MHMSGDRAPI
301: NTKMVKSRYS SGAASRSFTS TAFTPVTEND FELIKVEKNP KKKGYVQFRT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFILYKS ATHLNYKHTV FGGVVGGLST LAVMESVPVD ETDRPLEEIK IIEANVFVNP
501: YTEPDEEEEE KEKAEKEKNE DKDIEKVGSW YSNPGSGTAE GGAGTGGVGK YLKAKSNAAT KDTSGATDSD IAATGVSKKR KTTSASASTG FKDFSGW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.