CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69166
CDX75527
CDX79732
CDX81436
CDX84503
CDX87236
CDX95008
CDY07084
CDY08876
CDY16789
CDY22958
CDY24176
CDY28363
CDY34116
CDY43799
CDY44622
CDY46773
CDY47646
CDY59084
CDY66028
CDY71816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	CDX95008	AT1G09140.1	16497658
AT1G53720.1	CDY66028	AT1G09140.1	16497658
AT1G53720.1	CDY47646	AT1G23860.1	16497658
AT1G53720.1	CDY59084	AT1G23860.1	16497658
AT1G53720.1	CDX79732	AT2G37340.1	16497658
AT1G53720.1	CDY46773	AT2G37340.1	16497658
AT1G53720.1	CDY07084	AT3G13570.1	16497658
AT1G53720.1	CDY24176	AT3G13570.1	16497658
AT1G53720.1	CDX81436	AT3G61860.1	16497658
AT1G53720.1	CDY22958	AT3G61860.1	16497658
AT1G53720.1	CDX69166	AT4G35800.1	16497658
AT1G53720.1	CDX75527	AT4G35800.1	16497658
AT1G53720.1	CDY08876	AT4G35800.1	16497658
AT1G53720.1	CDY71816	AT4G35800.1	16497658
AT1G53720.1	CDX87236	AT5G62190.1	16497658
AT1G53720.1	CDY16789	AT5G62190.1	16497658
AT1G53720.1	CDY28363	AT5G62190.1	16497658
AT1G53720.1	CDY34116	AT5G62190.1	16497658
AT1G53720.1	CDY44622	AT5G62190.1	16497658
AT1G53720.1	CDX84503	AT5G64200.2	16497658
AT1G53720.1	CDY43799	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	40.17	50.0
CDX75068	Canola	cytosol	26.5	18.9
CDX84155	Canola	cytosol	26.5	18.9
CDY38037	Canola	mitochondrion, plastid	29.06	17.62
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	29.06	16.5
TraesCS3D01G065600.1	Wheat	cytosol	43.59	15.27
HORVU1Hr1G015670.5	Barley	cytosol	29.91	14.46
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	27.35	13.28
TraesCS3A01G064900.1	Wheat	cytosol	45.3	13.09
AT1G53720.1	Thale cress	nucleus	56.41	13.04
Bra030819.1-P	Field mustard	cytosol	59.83	12.87
Zm00001d036620_P001	Maize	nucleus	46.15	12.08
Os06t0670400-00	Rice	cytosol	45.3	11.3
TraesCS4A01G064400.1	Wheat	nucleus	45.3	11.09
TraesCS4D01G241400.1	Wheat	nucleus	44.44	10.81
TraesCS4B01G241800.1	Wheat	nucleus	41.88	10.52
GSMUA_Achr10P...	Banana	cytosol	47.86	10.11
Solyc07g066420.2.1	Tomato	nucleus	50.43	10.05
KRH13056	Soybean	nucleus	52.99	9.79
Os06t0670500-01	Rice	cytosol	47.01	9.75
KRG93223	Soybean	nucleus	52.99	9.69
HORVU7Hr1G107520.5	Barley	nucleus	46.15	9.66
EER88795	Sorghum	cytosol	46.15	9.66
TraesCS7D01G457200.1	Wheat	nucleus	45.3	9.48
TraesCS7B01G371900.1	Wheat	nucleus	45.3	9.48
TraesCS7A01G469800.1	Wheat	nucleus	45.3	9.48
PGSC0003DMT400056014	Potato	cytosol	14.53	9.44
VIT_19s0027g01660.t01	Wine grape	nucleus	50.43	9.25
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	16.24	8.12
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	16.24	8.12
CDY10512	Canola	nucleus	57.27	6.75
CDX83335	Canola	mitochondrion, plastid	12.82	6.49
CDX68936	Canola	nucleus	25.64	6.42
CDX75321	Canola	nucleus	25.64	6.1
CDY36499	Canola	cytosol	28.21	5.53
CDY08725	Canola	cytosol	28.21	5.53
CDY08708	Canola	cytosol	27.35	5.14
CDX99192	Canola	cytosol	27.35	5.14
PGSC0003DMT400069100	Potato	cytosol	14.53	4.96
PGSC0003DMT400011166	Potato	nucleus	4.27	1.71
CDY69933	Canola	cytosol, nucleus	0.0	0.0
PGSC0003DMT400011164	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078K0K0	UniProt:A0A078K0K0	EnsemblPlants:CDY72459	ProteinID:CDY72459
ProteinID:CDY72459.1	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00029810001	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	SUPFAM:SSF50891	UniParc:UPI0004EDBA53
SEG:seg	:	:	:	:	:

Description

BnaAnng41240DBnaAnng41240D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0K0]

Coordinates

chrLK051155:-:135..849

Molecular Weight (calculated)

12821.7 Da

IEP (calculated)

9.024

GRAVY (calculated)

0.014

Length

117 amino acids

Sequence
(BLAST)

001: CVGVNVEVAF IPSVSILLPK TKPNLIDLLS RTFSEKDEKS TRPPLRKTTM SVLIVTSLGD IVIDLHSSKC PLTCKNFLKL CKIKYYNGCL FHTVQKDFTA
101: QTGDPTGTGL GGDSIYK

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.