Factsheet for Bra030819.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010510.1-P
Bra011638.1-P
Bra018581.1-P
Bra023114.1-P
Bra024276.1-P
Bra024624.1-P
Bra029275.1-P
Bra035903.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	Bra018581.1-P	AT1G09140.1	16497658
AT1G53720.1	Bra024624.1-P	AT1G23860.1	16497658
AT1G53720.1	Bra023114.1-P	AT2G37340.1	16497658
AT1G53720.1	Bra039394.1-P	AT3G13570.1	16497658
AT1G53720.1	Bra010510.1-P	AT4G35800.1	16497658
AT1G53720.1	Bra011638.1-P	AT4G35800.1	16497658
AT1G53720.1	Bra029275.1-P	AT5G62190.1	16497658
AT1G53720.1	Bra035903.1-P	AT5G62190.1	16497658
AT1G53720.1	Bra024276.1-P	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G53720.1	Thale cress	nucleus	76.29	82.02
PGSC0003DMT400056014	Potato	cytosol	24.63	74.44
PGSC0003DMT400011164	Potato	cytosol	23.16	68.11
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	24.26	64.08
HORVU1Hr1G015670.5	Barley	cytosol	27.76	62.4
PGSC0003DMT400011166	Potato	nucleus	33.27	61.99
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	27.39	61.83
PGSC0003DMT400069100	Potato	cytosol	38.79	61.52
TraesCS3D01G065600.1	Wheat	cytosol	37.68	61.38
CDY72459	Canola	cytosol, extracellular, plastid	12.87	59.83
Solyc07g066420.2.1	Tomato	nucleus	63.05	58.43
Zm00001d036620_P001	Maize	nucleus	47.43	57.72
TraesCS3A01G064900.1	Wheat	cytosol	42.1	56.54
TraesCS4A01G064400.1	Wheat	nucleus	48.9	55.65
KRG93223	Soybean	nucleus	64.89	55.16
VIT_19s0027g01660.t01	Wine grape	nucleus	64.34	54.86
KRH13056	Soybean	nucleus	63.79	54.82
TraesCS4D01G241400.1	Wheat	nucleus	48.35	54.68
GSMUA_Achr10P...	Banana	cytosol	55.33	54.33
TraesCS7D01G457200.1	Wheat	nucleus	55.7	54.2
TraesCS4B01G241800.1	Wheat	nucleus	46.32	54.08
HORVU7Hr1G107520.5	Barley	nucleus	55.51	54.02
TraesCS7A01G469800.1	Wheat	nucleus	55.51	54.02
TraesCS7B01G371900.1	Wheat	nucleus	55.51	54.02
EER88795	Sorghum	cytosol	54.6	53.13
Os06t0670500-01	Rice	cytosol	54.78	52.84
CDY10512	Canola	nucleus	96.14	52.72
Os06t0670400-00	Rice	cytosol	45.04	52.24
Bra005297.1-P	Field mustard	cytosol	12.32	40.85
Bra032657.1-P	Field mustard	cytosol	11.95	40.62
Bra011410.1-P	Field mustard	nucleus	18.57	20.45
Bra029595.1-P	Field mustard	mitochondrion, plastid	6.99	16.1
Bra024442.1-P	Field mustard	cytosol	14.15	12.9
Bra019430.1-P	Field mustard	cytosol	12.13	10.61

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra030819	EnsemblPlants:Bra030819.1	EnsemblPlants:Bra030819.1-P
InterPro:CRIP	ncoils:Coil	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	InterPro:Cyclophilin_PPIL4
GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR002130	InterPro:IPR012677
InterPro:IPR029000	UniProt:M4EPU8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFAM:PF00160
PRINTS:PR00153	PFscan:PS50072	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928	SUPFAM:SSF57756
SignalP:SignalP-noTM	UniParc:UPI0002546E8E	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

AT1G53720 (E=8e-209) ATCYP59, CYP59 | CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase

Coordinates

chrA08:-:71688..76892

Molecular Weight (calculated)

62484.6 Da

IEP (calculated)

6.229

GRAVY (calculated)

-1.071

Length

544 amino acids

Sequence
(BLAST)

001: MRGQHCCRKT TMSVLIVTSL GDIVIDLHSS KCPLTCKNFL KLCKIKYYNG CLFHTVQKDF TAQTGDPTGT GLGGDSIYKF LYGEQARFFG DEIHLDLKHS
101: KTGTVAMASA GENLNASQFY FTLRDDLDYL DGKHTVFGEI AEGLDTLTRI NEAYVDAKNR PYKNIRIKHT YILEDPFEDP TQLADMIPDA SPEGKPKEEV
201: EVDVRLEDDW VPMDEQLGAH ELEEIIRAKA AHSSAVVLES IGDIPEAEVK PPENVLFVCK LNPVTEDEDL HTIFSRFGTV ISADVIRDFK TGDSLCYAFI
301: EFEEKAACEQ AYNKMDNALI DDRRIHVDFS QSVSKLWSQF RQKDSQKGKG NGCFKCGSTD HVAKDCVGGG NQASKFIVKD QNRQHGGGEG YDMVFEGDIA
401: ERPKREKSHD KDKIRRRSPH GYGEGKRQDR DEGRSPGGYD EGKRRDKDEG RSGRVYGEGK RRDRDEGDTE DKAASKYDGR RDDREDVRER DRRYDDGVSR
501: EKKQRERNER ESREDEERRR RRRHEEMRDD RWSDKGRRRE RRDR

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.