Factsheet for Bra039394.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra014741.1-P
Bra018581.1-P
Bra023114.1-P
Bra024276.1-P
Bra024624.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	Bra018581.1-P	AT1G09140.1	18674533
AT3G13570.1	Bra024624.1-P	AT1G23860.1	18674533
AT3G13570.1	Bra023114.1-P	AT2G37340.1	18674533
AT3G13570.1	Bra000304.1-P	AT2G43370.1	15987817
AT3G13570.1	Bra039394.1-P	AT3G13570.1	18674533
AT3G13570.1	Bra014741.1-P	AT3G55460.1	18674533
AT3G13570.1	Bra024276.1-P	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07084	Canola	nucleus	99.62	99.62
CDY24176	Canola	nucleus	98.1	98.85
AT3G13570.1	Thale cress	nucleus	89.35	89.69
PGSC0003DMT400081835	Potato	nucleus	61.6	65.32
Solyc01g005820.2.1	Tomato	nucleus	62.36	65.08
Bra034794.1-P	Field mustard	nucleus	49.43	62.8
Bra037991.1-P	Field mustard	nucleus	58.17	61.94
Bra011910.1-P	Field mustard	nucleus	74.52	61.44
PGSC0003DMT400010908	Potato	nucleus	63.5	59.64
KRH38014	Soybean	endoplasmic reticulum, nucleus	52.09	47.9
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	44.11	39.32
Bra030870.1-P	Field mustard	plastid	25.1	36.46
Bra024276.1-P	Field mustard	nucleus	30.04	28.21

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra039394	EnsemblPlants:Bra039394.1	EnsemblPlants:Bra039394.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016607	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4FE73	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253E947
SEG:seg	:	:	:	:	:

Description

AT3G13570 (E=1e-069) SCL30A | SCL30a; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrScaffold000164:+:260497..262394

Molecular Weight (calculated)

30578.7 Da

IEP (calculated)

12.039

GRAVY (calculated)

-1.695

Length

263 amino acids

Sequence
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGG GGRDRDLPTS LLVRNLRHDC RQEDLRRPFE QFGPVKDIYL PRDYYTGDPR GFGFIQYVDP ADAAEAKHHM
101: EGYLLLGREL TVVFAEENRK KPTEMRTRDR GGRSNRFNDR RRSPPRYSRS PPPRRGGRTR SRSREYNSPP PKRHQSRSVS PQERRYEKER SYSRSPPRNG
201: SRARSGSHEK VKKSYSRSRS PRRSVSPRRN RSYTPEQARS PVPRQSRSPS PRGERNGDRS PSQ

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.