Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08236 | Canola | nucleus | 98.75 | 99.06 |
| CDY26110 | Canola | mitochondrion, nucleus | 88.71 | 95.29 |
| AT1G55310.3 | Thale cress | nucleus | 71.47 | 76.25 |
| Bra037991.1-P | Field mustard | nucleus | 57.99 | 74.9 |
| Bra039394.1-P | Field mustard | nucleus | 61.44 | 74.52 |
| PGSC0003DMT400081835 | Potato | nucleus | 53.29 | 68.55 |
| Solyc01g005820.2.1 | Tomato | nucleus | 52.98 | 67.06 |
| Bra034794.1-P | Field mustard | nucleus | 41.07 | 63.28 |
| PGSC0003DMT400010908 | Potato | nucleus | 52.98 | 60.36 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 42.32 | 47.2 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 35.74 | 38.64 |
| Bra030870.1-P | Field mustard | plastid | 19.75 | 34.81 |
| Bra024276.1-P | Field mustard | nucleus | 25.08 | 28.57 |
Protein Annotations
| EnsemblPlants:Bra011910.1 | EnsemblPlants:Bra011910.1-P | EnsemblPlantsGene:Bra011910 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002541346 | UniProt:M4D602 | MapMan:16.4.6.2 | : |
Description
AT1G55310 (E=2e-057) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding
Coordinates
chrA07:-:11402834..11404957
Molecular Weight (calculated)
36795.1 Da
IEP (calculated)
12.289
GRAVY (calculated)
-1.587
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTPSP PRGSYGRRDR RSPSPRGGGR YGGARSLDLP TSLLVRNLRH DCRQEDLRRS FEQFGPLKDI YMPRDYYTGD PRGFGFVQFV DPADAAEAKY
101: QMDGYHLLGR ELTVVFAEEN RKKPTEMRAR ERGGGRSIRS RDRRRSPPRY YSRSPPPRRG RSRSRSGDYY SPPSTRHHSR SISPREERYA RGRSYSRSPA
201: YNGSRGRSVT PARSKRRSIS RSPSPGRSIS PSPRRNVSRS PSPRRSRSNT PVPARGRSPR RKRRSNTPIP TRSSPKRKRS NTPIPARSRS PKRKRSNTPI
301: PARNRSQREE EYEDRSPSQ
101: QMDGYHLLGR ELTVVFAEEN RKKPTEMRAR ERGGGRSIRS RDRRRSPPRY YSRSPPPRRG RSRSRSGDYY SPPSTRHHSR SISPREERYA RGRSYSRSPA
201: YNGSRGRSVT PARSKRRSIS RSPSPGRSIS PSPRRNVSRS PSPRRSRSNT PVPARGRSPR RKRRSNTPIP TRSSPKRKRS NTPIPARSRS PKRKRSNTPI
301: PARNRSQREE EYEDRSPSQ
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.