Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24043 | Canola | nucleus | 79.93 | 84.15 |
| CDY33060 | Canola | nucleus | 79.26 | 82.58 |
| Bra037991.1-P | Field mustard | nucleus | 63.88 | 77.33 |
| AT3G13570.1 | Thale cress | nucleus | 66.89 | 76.34 |
| CDY26110 | Canola | mitochondrion, nucleus | 74.25 | 74.75 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 52.17 | 71.89 |
| Bra011910.1-P | Field mustard | nucleus | 76.25 | 71.47 |
| CDY08236 | Canola | nucleus | 75.92 | 71.38 |
| PGSC0003DMT400081835 | Potato | nucleus | 56.52 | 68.15 |
| Solyc01g005820.2.1 | Tomato | nucleus | 56.86 | 67.46 |
| Os03t0374575-01 | Rice | nucleus | 48.49 | 66.82 |
| EER92211 | Sorghum | nucleus | 46.82 | 65.73 |
| Zm00001d022243_P002 | Maize | nucleus | 45.48 | 65.07 |
| Zm00001d047401_P001 | Maize | nucleus | 46.15 | 63.89 |
| EER97602 | Sorghum | nucleus | 44.48 | 63.64 |
| Os07t0633200-02 | Rice | nucleus | 43.81 | 61.5 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 50.17 | 61.22 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 41.47 | 60.49 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 41.14 | 60.0 |
| Zm00001d029629_P001 | Maize | nucleus | 9.03 | 60.0 |
| PGSC0003DMT400010908 | Potato | nucleus | 56.19 | 60.0 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 41.47 | 59.9 |
| Zm00001d019443_P002 | Maize | nucleus | 21.07 | 59.43 |
| Zm00001d016504_P001 | Maize | nucleus | 14.72 | 58.67 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 40.8 | 58.65 |
| Zm00001d005285_P001 | Maize | nucleus | 26.76 | 55.94 |
| Zm00001d004470_P001 | Maize | nucleus | 19.4 | 52.25 |
| Zm00001d029305_P001 | Maize | nucleus | 28.09 | 51.22 |
| CDY02449 | Canola | nucleus | 38.46 | 49.57 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 46.15 | 48.25 |
| Zm00001d010881_P001 | Maize | nucleus | 29.43 | 48.09 |
| AT5G18810.1 | Thale cress | nucleus | 35.45 | 44.92 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 36.79 | 41.98 |
| CDY10571 | Canola | nucleus | 45.15 | 40.06 |
| Zm00001d005739_P004 | Maize | cytosol | 14.38 | 39.09 |
| Bra030870.1-P | Field mustard | plastid | 23.08 | 38.12 |
| Zm00001d015189_P001 | Maize | nucleus | 22.41 | 38.07 |
| Zm00001d012570_P002 | Maize | extracellular | 19.73 | 36.2 |
| Zm00001d043759_P001 | Maize | cytosol | 17.73 | 34.42 |
| Zm00001d010176_P001 | Maize | cytosol | 11.71 | 30.7 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 21.07 | 29.17 |
| AT5G64200.2 | Thale cress | nucleus | 28.43 | 28.05 |
| Zm00001d004722_P001 | Maize | cytosol | 8.7 | 24.53 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EntrezGene:841976 | UniProt:A0A2H1ZEE9 | ProteinID:AEE33224.2 | ArrayExpress:AT1G55310 |
| EnsemblPlantsGene:AT1G55310 | RefSeq:AT1G55310 | TAIR:AT1G55310 | RefSeq:AT1G55310-TAIR-G | EnsemblPlants:AT1G55310.3 | TAIR:AT1G55310.3 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_001319239.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | Symbol:SR33 | SUPFAM:SSF54928 | UniParc:UPI0008492BC0 | SEG:seg | : |
Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
Coordinates
chr1:+:20630070..20632973
Molecular Weight (calculated)
34642.5 Da
IEP (calculated)
12.164
GRAVY (calculated)
-1.578
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGSHLCTD TCKASRDPRG FGFVQFMDPA
101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGRFRDRRRT PPRYYSRSRS PPPRRGRSRS RSGDYYSPPP RRHHPRSISP REERYDGRRS
201: YSRSPASDGS RGRSLTPVRG KSRSLSPSPR RSISRSPRRS RSPSPKRNRS VSPRRSISRS PRRSRSPRRS RRSYTPEPAR SRSQSPHGGQ YDEDRSPSQ
101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGRFRDRRRT PPRYYSRSRS PPPRRGRSRS RSGDYYSPPP RRHHPRSISP REERYDGRRS
201: YSRSPASDGS RGRSLTPVRG KSRSLSPSPR RSISRSPRRS RSPSPKRNRS VSPRRSISRS PRRSRSPRRS RRSYTPEPAR SRSQSPHGGQ YDEDRSPSQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.