Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029629_P001 | Maize | nucleus | 13.5 | 48.89 |
| Zm00001d005285_P001 | Maize | nucleus | 36.81 | 41.96 |
| Zm00001d019443_P002 | Maize | nucleus | 25.15 | 38.68 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 48.47 | 36.57 |
| Zm00001d010881_P001 | Maize | nucleus | 39.26 | 34.97 |
| Zm00001d029305_P001 | Maize | nucleus | 34.97 | 34.76 |
| EER92211 | Sorghum | nucleus | 43.56 | 33.33 |
| Zm00001d047401_P001 | Maize | nucleus | 43.56 | 32.87 |
| Os03t0374575-01 | Rice | nucleus | 42.94 | 32.26 |
| Zm00001d004722_P001 | Maize | cytosol | 20.25 | 31.13 |
| Zm00001d022243_P002 | Maize | nucleus | 34.97 | 27.27 |
| Bra034794.1-P | Field mustard | nucleus | 34.36 | 27.05 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 40.49 | 26.94 |
| Zm00001d015189_P001 | Maize | nucleus | 28.83 | 26.7 |
| CDY08473 | Canola | nucleus | 32.52 | 25.85 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 34.36 | 25.81 |
| KRH16958 | Soybean | nucleus | 39.26 | 25.7 |
| PGSC0003DMT400081835 | Potato | nucleus | 38.65 | 25.4 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 38.04 | 25.31 |
| Solyc01g005820.2.1 | Tomato | nucleus | 38.65 | 25.0 |
| KRH72576 | Soybean | nucleus | 38.65 | 24.9 |
| Zm00001d004470_P001 | Maize | nucleus | 16.56 | 24.32 |
| AT3G13570.1 | Thale cress | nucleus | 38.65 | 24.05 |
| CDY01078 | Canola | nucleus | 33.74 | 23.11 |
| PGSC0003DMT400010908 | Potato | nucleus | 38.65 | 22.5 |
| Zm00001d005739_P004 | Maize | cytosol | 14.72 | 21.82 |
| AT1G55310.3 | Thale cress | nucleus | 36.2 | 19.73 |
| Zm00001d010176_P001 | Maize | cytosol | 13.5 | 19.3 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 33.74 | 19.23 |
| Zm00001d006906_P010 | Maize | mitochondrion | 29.45 | 19.05 |
| Zm00001d043759_P001 | Maize | cytosol | 17.79 | 18.83 |
| Zm00001d016504_P001 | Maize | nucleus | 8.59 | 18.67 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 32.52 | 18.4 |
| Zm00001d029256_P002 | Maize | nucleus | 26.38 | 17.55 |
| Zm00001d022189_P002 | Maize | nucleus | 26.38 | 16.93 |
| Zm00001d052803_P004 | Maize | nucleus | 28.22 | 15.28 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 33.13 | 14.63 |
| Zm00001d031269_P002 | Maize | nucleus | 26.99 | 12.79 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 20.86 | 7.87 |
Protein Annotations
| EnsemblPlants:Zm00001d012570_P002 | EnsemblPlants:Zm00001d012570_T002 | EnsemblPlantsGene:Zm00001d012570 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:RBD_domain_sf | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF11 |
| ProteinID:AQK99887.1 | SEG:seg | SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI0008437073 | UniProt:A0A1D6G9V3 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:176792139..176793772
Molecular Weight (calculated)
18498.4 Da
IEP (calculated)
11.343
GRAVY (calculated)
-0.468
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMRCFLLHI AMRIDYSLIL HYCNLVVITT VGLMTFIDHL ENLAPLKTYI AKGLLHSVRE PRGFGFIQYF DPEDASDANG RGRSYDGRLR SRSPGLKDSP
101: RGRSRSQSRS YLPALKRKHY SRSPAPRPRE RSLSCSLAVN RSRSASPIVS RSPRRQGSLS VSE
101: RGRSRSQSRS YLPALKRKHY SRSPAPRPRE RSLSCSLAVN RSRSASPIVS RSPRRQGSLS VSE
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGSHLCTD TCKASRDPRG FGFVQFMDPA
101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGRFRDRRRT PPRYYSRSRS PPPRRGRSRS RSGDYYSPPP RRHHPRSISP REERYDGRRS
201: YSRSPASDGS RGRSLTPVRG KSRSLSPSPR RSISRSPRRS RSPSPKRNRS VSPRRSISRS PRRSRSPRRS RRSYTPEPAR SRSQSPHGGQ YDEDRSPSQ
101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGRFRDRRRT PPRYYSRSRS PPPRRGRSRS RSGDYYSPPP RRHHPRSISP REERYDGRRS
201: YSRSPASDGS RGRSLTPVRG KSRSLSPSPR RSISRSPRRS RSPSPKRNRS VSPRRSISRS PRRSRSPRRS RRSYTPEPAR SRSQSPHGGQ YDEDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.