Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97037 | Sorghum | nucleus | 46.83 | 52.4 |
| GSMUA_Achr8P09080_001 | Banana | nucleus | 28.83 | 51.09 |
| Os09t0513700-01 | Rice | nucleus | 38.65 | 50.4 |
| CDY22251 | Canola | cytosol | 15.54 | 49.35 |
| CDY44222 | Canola | nucleus | 29.65 | 45.45 |
| CDX83484 | Canola | nucleus | 29.45 | 44.72 |
| Bra000304.1-P | Field mustard | nucleus | 29.24 | 44.55 |
| KRH46935 | Soybean | nucleus | 28.22 | 42.2 |
| AT2G43370.1 | Thale cress | nucleus | 28.63 | 42.04 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 35.58 | 41.53 |
| Solyc09g098390.2.1 | Tomato | nucleus | 29.65 | 40.85 |
| KRH01744 | Soybean | nucleus | 28.83 | 40.63 |
| PGSC0003DMT400055636 | Potato | nucleus | 29.24 | 40.62 |
| VIT_05s0102g00080.t01 | Wine grape | nucleus | 28.22 | 40.59 |
| CDY23361 | Canola | endoplasmic reticulum | 21.06 | 40.39 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 34.76 | 38.2 |
| CDY14697 | Canola | cytosol, mitochondrion | 13.91 | 37.57 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 35.58 | 37.02 |
| HORVU5Hr1G078170.27 | Barley | nucleus | 31.7 | 33.55 |
| Zm00001d014343_P002 | Maize | nucleus | 16.56 | 14.41 |
Protein Annotations
| EntrezGene:100383273 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6I8I0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0019013 |
| GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM56351.1 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00084322F1 | EnsemblPlantsGene:Zm00001d021137 | EnsemblPlants:Zm00001d021137_P002 | EnsemblPlants:Zm00001d021137_T002 | SEG:seg |
Description
U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Coordinates
chr7:+:143757096..143760726
Molecular Weight (calculated)
57020.4 Da
IEP (calculated)
9.977
GRAVY (calculated)
-1.544
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGSVSAVF YADKYHPIQA GSIDGTDVAP HDNAVLRALI CSQAGLCACA VRVSAIPLST YPLRTSPLPG FPSRSVSDDP FGDPKASGDP HRTVFVGRLS
101: RQTDDDTLRK AMSRYGRVKS MRLVRDIVTG ASRGYAFVEY ETDREMHRAY EVSAIYGGGL GGMKESGQLR FGGRERPFRA PLRPIPYDEL KKLGIPPPPE
201: GRYMTRYQVP PPPRRKSSNI DIEDSPPGRR SKDRAGVSTY RRQRSSNDDD ETLLKRKSSR DGLEESQSRR SARSSITKED NRYSSQRKSK EHDKGHRKHR
301: RSQDPGEVSP PAEEDGSYER QRTLEEPDRS PDRYHHHWHH RDDTYESRHL RHRDHRKRRR SQEPGEVSPP EEDCSHERER TSDEPGRSPD RYHHHWHQRD
401: GTYESRHSRH RDHRKRRRSQ EPGVSPLEED SSYERERTSD ELGRSPDWYH HHRHHREDTY ESRHSHHRDR RRHGDRHRTK RSESRDYRD
101: RQTDDDTLRK AMSRYGRVKS MRLVRDIVTG ASRGYAFVEY ETDREMHRAY EVSAIYGGGL GGMKESGQLR FGGRERPFRA PLRPIPYDEL KKLGIPPPPE
201: GRYMTRYQVP PPPRRKSSNI DIEDSPPGRR SKDRAGVSTY RRQRSSNDDD ETLLKRKSSR DGLEESQSRR SARSSITKED NRYSSQRKSK EHDKGHRKHR
301: RSQDPGEVSP PAEEDGSYER QRTLEEPDRS PDRYHHHWHH RDDTYESRHL RHRDHRKRRR SQEPGEVSPP EEDCSHERER TSDEPGRSPD RYHHHWHQRD
401: GTYESRHSRH RDHRKRRRSQ EPGVSPLEED SSYERERTSD ELGRSPDWYH HHRHHREDTY ESRHSHHRDR RRHGDRHRTK RSESRDYRD
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
Arabidopsis Description
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.