Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 85.84 | 81.67 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 73.65 | 80.5 |
| Os03t0285900-01 | Rice | nucleus | 73.94 | 79.09 |
| Zm00001d011004_P008 | Maize | nucleus | 70.82 | 73.96 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 70.25 | 72.51 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 70.25 | 72.51 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 69.97 | 72.43 |
| PGSC0003DMT400060435 | Potato | nucleus | 57.51 | 67.67 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 69.97 | 67.12 |
| KRH67593 | Soybean | endoplasmic reticulum | 54.39 | 66.9 |
| KRG95876 | Soybean | nucleus | 54.39 | 66.9 |
| GSMUA_Achr10P... | Banana | nucleus | 59.49 | 64.62 |
| KRH67596 | Soybean | nucleus | 54.39 | 64.21 |
| CDX79732 | Canola | nucleus | 52.97 | 63.82 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 60.91 | 63.8 |
| CDX78183 | Canola | nucleus | 50.99 | 63.6 |
| CDX73550 | Canola | nucleus | 50.99 | 63.38 |
| KRG95883 | Soybean | nucleus | 53.26 | 63.3 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 47.59 | 63.16 |
| AT2G37340.1 | Thale cress | nucleus | 51.56 | 62.76 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 50.42 | 62.68 |
| CDX80835 | Canola | nucleus | 46.46 | 61.89 |
| CDY11223 | Canola | nucleus | 45.61 | 61.22 |
| CDY07586 | Canola | mitochondrion, nucleus | 49.86 | 61.11 |
| Bra007004.1-P | Field mustard | nucleus | 50.99 | 60.61 |
| CDY52755 | Canola | mitochondrion, nucleus | 49.86 | 60.48 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 49.86 | 60.48 |
| Solyc05g054920.2.1 | Tomato | nucleus | 57.22 | 59.94 |
| Bra023114.1-P | Field mustard | nucleus | 52.69 | 58.86 |
| CDY46773 | Canola | nucleus | 52.41 | 58.54 |
| Bra005756.1-P | Field mustard | nucleus | 37.68 | 57.83 |
| Solyc09g005980.2.1 | Tomato | nucleus | 51.56 | 57.78 |
| PGSC0003DMT400061471 | Potato | nucleus | 50.99 | 57.14 |
| Zm00001d037543_P001 | Maize | nucleus | 24.93 | 48.89 |
| KRH42195 | Soybean | endoplasmic reticulum | 37.68 | 48.36 |
| KRH58317 | Soybean | nucleus | 27.2 | 43.84 |
| Zm00001d035551_P007 | Maize | nucleus | 45.61 | 41.07 |
| Zm00001d047498_P003 | Maize | nucleus | 25.78 | 31.93 |
| Zm00001d040672_P013 | Maize | nucleus | 26.06 | 31.4 |
| Zm00001d041673_P001 | Maize | cytosol | 7.93 | 24.56 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 23.51 | 23.99 |
| Zm00001d009821_P001 | Maize | plastid | 13.88 | 15.41 |
Protein Annotations
| EntrezGene:100276428 | MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | ProteinID:AQK95446.1 | ProteinID:AQK95447.1 |
| EMBL:BT070075 | UniProt:C0PP56 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | EMBL:KC424992 | EMBL:KC424993 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF25 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 |
| SUPFAM:SSF57756 | UniParc:UPI000195D50A | EnsemblPlantsGene:Zm00001d011005 | EnsemblPlants:Zm00001d011005_P005 | EnsemblPlants:Zm00001d011005_T005 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
Serine/arginine-rich splicing factor RS2Z32
Coordinates
chr8:+:136504866..136508752
Molecular Weight (calculated)
39008.5 Da
IEP (calculated)
11.646
GRAVY (calculated)
-1.533
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDDRYGG TRLYVGRLAT RTRSRDLEHL FGRYGRIREV ELKRDYAFIE FSDHRDADEA RYQLDGRDVD GSRIVVEFAK GVPRGSGGSR EYMGRGPPPG
101: TGRCFNCGVD GHWARDCKAG DWKNKCYRCG ERGHIERNCQ NSPRSLRRER SYSRSPSPRR GRGRSRSYSR SRSRSRSYSR SRSLSRSPRG GRRDRDDRRS
201: RSPSYSRSPM RSASPPVKEK ERSPAPDGSR SPRSRSPQDQ VMSPPPKDNG EGNGSDRGGS PRGRENSRSC SRSRSPSGSN RSPAANGRSR SPGGERSPSP
301: GGERSPSPRG ERSPSPRADR SPSPNGNGNN DAAADVDADA AARSGSPTGS KSP
101: TGRCFNCGVD GHWARDCKAG DWKNKCYRCG ERGHIERNCQ NSPRSLRRER SYSRSPSPRR GRGRSRSYSR SRSRSRSYSR SRSLSRSPRG GRRDRDDRRS
201: RSPSYSRSPM RSASPPVKEK ERSPAPDGSR SPRSRSPQDQ VMSPPPKDNG EGNGSDRGGS PRGRENSRSC SRSRSPSGSN RSPAANGRSR SPGGERSPSP
301: GGERSPSPRG ERSPSPRADR SPSPNGNGNN DAAADVDADA AARSGSPTGS KSP
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.