Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73550 | Canola | nucleus | 90.49 | 90.49 |
| CDX78183 | Canola | nucleus | 90.14 | 90.46 |
| CDY07586 | Canola | mitochondrion, nucleus | 91.2 | 89.93 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 91.55 | 89.35 |
| CDY52755 | Canola | mitochondrion, nucleus | 91.55 | 89.35 |
| Bra007004.1-P | Field mustard | nucleus | 90.14 | 86.2 |
| AT2G37340.1 | Thale cress | nucleus | 80.99 | 79.31 |
| KRH67593 | Soybean | endoplasmic reticulum | 68.66 | 67.94 |
| KRG95876 | Soybean | nucleus | 68.31 | 67.6 |
| KRG95883 | Soybean | nucleus | 65.14 | 62.29 |
| KRH67596 | Soybean | nucleus | 65.49 | 62.21 |
| PGSC0003DMT400060435 | Potato | nucleus | 65.14 | 61.67 |
| EES00292 | Sorghum | nucleus | 58.8 | 56.42 |
| KXG21152 | Sorghum | nucleus | 61.27 | 55.77 |
| Solyc05g054920.2.1 | Tomato | nucleus | 65.85 | 55.49 |
| GSMUA_Achr10P... | Banana | nucleus | 63.03 | 55.08 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 51.41 | 54.89 |
| Solyc09g005980.2.1 | Tomato | nucleus | 60.56 | 54.6 |
| PGSC0003DMT400061471 | Potato | nucleus | 60.56 | 54.6 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 60.56 | 53.25 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 51.76 | 52.88 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 62.68 | 52.82 |
| Os01t0155600-01 | Rice | nucleus | 59.86 | 52.47 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 52.82 | 52.26 |
| Os03t0285900-01 | Rice | nucleus | 60.56 | 52.12 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 52.46 | 51.92 |
| KXG21387 | Sorghum | nucleus | 48.24 | 51.7 |
| Zm00001d011004_P008 | Maize | nucleus | 61.27 | 51.48 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 61.62 | 51.32 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 61.62 | 51.17 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 61.27 | 50.88 |
| EES18924 | Sorghum | nucleus | 60.92 | 50.73 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 53.17 | 50.5 |
| Zm00001d011005_P005 | Maize | nucleus | 62.68 | 50.42 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 57.04 | 50.15 |
| TraesCS3D01G134500.1 | Wheat | nucleus | 57.04 | 50.0 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 57.04 | 48.65 |
| KRH42195 | Soybean | endoplasmic reticulum | 46.83 | 48.36 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 61.27 | 47.28 |
| Zm00001d037543_P001 | Maize | nucleus | 29.58 | 46.67 |
| OQU77498 | Sorghum | nucleus | 17.61 | 45.05 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 58.8 | 45.01 |
| KRH58317 | Soybean | nucleus | 31.69 | 41.1 |
| Os05t0162600-01 | Rice | nucleus | 45.77 | 38.46 |
| Zm00001d035551_P007 | Maize | nucleus | 44.37 | 32.14 |
| AT1G09140.1 | Thale cress | cytosol | 29.23 | 30.97 |
| AT1G02840.1 | Thale cress | nucleus | 31.69 | 29.7 |
| AT4G02430.4 | Thale cress | nucleus | 27.46 | 26.71 |
| AT3G49430.4 | Thale cress | nucleus | 28.17 | 26.67 |
| KXG21391 | Sorghum | nucleus | 37.32 | 26.5 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EntrezGene:824518 | UniProt:A0A178V7M8 | ProteinID:AEE79097.1 |
| ProteinID:AEE79098.1 | EMBL:AK316697 | ProteinID:ANM64556.1 | ArrayExpress:AT3G53500 | EnsemblPlantsGene:AT3G53500 | RefSeq:AT3G53500 |
| TAIR:AT3G53500 | RefSeq:AT3G53500-TAIR-G | EnsemblPlants:AT3G53500.2 | TAIR:AT3G53500.2 | EMBL:AY095996 | EMBL:BT001034 |
| ProteinID:CAB67657.2 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | RefSeq:NP_001326575.1 | RefSeq:NP_190918.3 |
| RefSeq:NP_851015.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP02280.1 | PFAM:PF00076 | PFAM:PF00098 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PFscan:PS50158 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF21 | UniProt:Q9FYB7 | InterPro:RBD_domain_sf | InterPro:RRM_dom | Symbol:RSZ32 |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI00000A5E46 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
Coordinates
chr3:-:19834240..19837088
Molecular Weight (calculated)
31824.5 Da
IEP (calculated)
10.735
GRAVY (calculated)
-1.422
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.