Factsheet for Solyc09g005980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc01g105140.2.1
Solyc02g085420.2.1
Solyc06g009060.2.1
Solyc07g066420.2.1
Solyc08g069120.2.1
Solyc09g075090.1.1
Solyc09g098390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	Solyc06g009060.2.1	AT1G02840.1	18674533
AT2G37340.1	Solyc09g075090.1.1	AT1G02840.1	18674533
AT2G37340.1	Solyc07g066420.2.1	AT1G53720.1	16497658
AT2G37340.1	Solyc09g098390.2.1	AT2G43370.1	15987817
AT2G37340.1	Solyc01g005820.2.1	AT3G13570.1	18674533
AT2G37340.1	Solyc02g085420.2.1	AT3G50670.1	18674533
AT2G37340.1	Solyc08g069120.2.1	AT4G31580.1	18674533
AT2G37340.1	Solyc01g080660.2.1	AT5G18810.1	18674533
AT2G37340.1	Solyc01g105140.2.1	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061471	Potato	nucleus	95.87	95.87
KRH67593	Soybean	endoplasmic reticulum	62.22	68.29
KRG95876	Soybean	nucleus	61.27	67.25
VIT_08s0040g02860.t01	Wine grape	nucleus	55.24	65.41
KRH67596	Soybean	nucleus	59.68	62.88
CDX80835	Canola	nucleus	52.38	62.26
CDX79732	Canola	nucleus	57.14	61.43
EES00292	Sorghum	nucleus	57.46	61.15
CDX78183	Canola	nucleus	54.92	61.13
AT2G37340.1	Thale cress	nucleus	56.19	61.03
CDY11223	Canola	nucleus	50.79	60.84
KRG95883	Soybean	nucleus	57.14	60.61
AT3G53500.2	Thale cress	mitochondrion, nucleus	54.6	60.56
CDX73550	Canola	nucleus	54.6	60.56
CDY07586	Canola	mitochondrion, nucleus	54.29	59.38
CDY52755	Canola	mitochondrion, nucleus	54.29	58.76
Bra003139.1-P	Field mustard	mitochondrion, nucleus	54.29	58.76
Bra005756.1-P	Field mustard	nucleus	42.86	58.7
KXG21152	Sorghum	nucleus	58.1	58.65
Bra007004.1-P	Field mustard	nucleus	54.92	58.25
Os05t0120100-01	Rice	mitochondrion, nucleus	59.68	58.2
GSMUA_Achr10P...	Banana	nucleus	60.0	58.15
Bra023114.1-P	Field mustard	nucleus	58.1	57.91
GSMUA_Achr6P15450_001	Banana	nucleus	61.59	57.57
Os01t0155600-01	Rice	nucleus	59.05	57.41
CDY46773	Canola	nucleus	57.46	57.28
Solyc05g054920.2.1	Tomato	nucleus	60.0	56.08
Os03t0285900-01	Rice	nucleus	58.73	56.06
TraesCS3B01G151100.1	Wheat	nucleus	55.87	54.49
TraesCS1D01G111000.2	Wheat	nucleus	49.52	54.36
TraesCS3D01G134500.1	Wheat	nucleus	55.87	54.32
TraesCS1A01G108000.2	Wheat	nucleus	47.94	54.32
TraesCS1B01G065900.2	Wheat	nucleus	58.41	53.96
TraesCS1D01G051900.1	Wheat	nucleus	58.41	53.8
TraesCS1A01G049700.1	Wheat	nucleus	58.41	53.8
Zm00001d011004_P008	Maize	nucleus	57.46	53.55
TraesCS1B01G130200.3	Wheat	nucleus	48.57	53.31
EES18924	Sorghum	nucleus	57.46	53.08
TraesCS3A01G308000.1	Wheat	nucleus	55.87	52.85
HORVU1Hr1G024060.21	Barley	nucleus	50.16	52.84
Zm00001d011005_P005	Maize	nucleus	57.78	51.56
KXG21387	Sorghum	nucleus	42.22	50.19
KRH42195	Soybean	endoplasmic reticulum	43.81	50.18
HORVU1Hr1G009950.7	Barley	nucleus, plastid	58.1	49.73
Zm00001d037543_P001	Maize	nucleus	27.94	48.89
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	57.14	48.52
OQU77498	Sorghum	nucleus	15.56	44.14
KRH58317	Soybean	nucleus	30.16	43.38
Os05t0162600-01	Rice	nucleus	44.44	41.42
Zm00001d035551_P007	Maize	nucleus	40.95	32.91
Solyc01g099810.2.1	Tomato	nucleus	25.71	30.68
KXG21391	Sorghum	nucleus	36.51	28.75
Solyc03g082380.2.1	Tomato	nucleus	24.76	27.86
Solyc09g075090.1.1	Tomato	nucleus	25.71	26.56
Solyc06g009060.2.1	Tomato	nucleus	17.78	21.37

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:K4CQ88
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	EnsemblPlantsGene:Solyc09g005980.2	EnsemblPlants:Solyc09g005980.2.1	UniParc:UPI000276B516	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:670381..673543

Molecular Weight (calculated)

35933.2 Da

IEP (calculated)

10.582

GRAVY (calculated)

-1.606

Length

315 amino acids

Sequence
(BLAST)

001: MPRYDDRVGN STRLYVGHLS SRTRSRDLER AFSKYGRVRD VDMKHDYAFV EFSDPRDADD ARYYLDGRDI DGRRIIVEFA KGVPRGPGGS REYLGKGPAP
101: GSGRCFNCGL EGHWARDCKA GDWKNKCYRC GERGHIERKC PNSPKKLSRR SYSRSPARSK SRSRSRSRSP RRSYSRSRSY SQSRSPPPKR EQVDQVKRSR
201: SYSRSPEPRK DSPSPPPKTR KRSPTPEEGS PMEAKSPSSP MREEGAYSQS PRERSVSPSS TRRDSPAPRK YDDDSPAEAN GGSRSPSPKY QRNHEDDEDE
301: GEFRNQRSGR ESQSP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.