Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21152 | Sorghum | nucleus | 81.36 | 88.14 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 71.3 | 74.61 |
| Os03t0285900-01 | Rice | nucleus | 71.3 | 73.03 |
| Zm00001d011005_P005 | Maize | nucleus | 73.96 | 70.82 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 70.41 | 69.59 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 69.82 | 69.21 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 69.82 | 69.01 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 73.37 | 66.85 |
| PGSC0003DMT400060435 | Potato | nucleus | 58.28 | 65.67 |
| KRH67593 | Soybean | endoplasmic reticulum | 55.33 | 65.16 |
| KRG95876 | Soybean | nucleus | 55.03 | 64.81 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 69.53 | 63.86 |
| CDX78183 | Canola | nucleus | 52.96 | 63.25 |
| GSMUA_Achr10P... | Banana | nucleus | 60.35 | 62.77 |
| CDX73550 | Canola | nucleus | 52.66 | 62.68 |
| CDX80835 | Canola | nucleus | 48.82 | 62.26 |
| KRH67596 | Soybean | nucleus | 54.73 | 61.87 |
| CDX79732 | Canola | nucleus | 53.55 | 61.77 |
| CDY11223 | Canola | nucleus | 47.93 | 61.6 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 61.24 | 61.42 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 51.48 | 61.27 |
| AT2G37340.1 | Thale cress | nucleus | 52.37 | 61.03 |
| CDY07586 | Canola | mitochondrion, nucleus | 51.78 | 60.76 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 47.63 | 60.53 |
| KRG95883 | Soybean | nucleus | 52.96 | 60.27 |
| Bra007004.1-P | Field mustard | nucleus | 52.96 | 60.27 |
| CDY52755 | Canola | mitochondrion, nucleus | 51.78 | 60.14 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 51.78 | 60.14 |
| Solyc05g054920.2.1 | Tomato | nucleus | 58.58 | 58.75 |
| Bra005756.1-P | Field mustard | nucleus | 39.94 | 58.7 |
| Solyc09g005980.2.1 | Tomato | nucleus | 53.55 | 57.46 |
| Bra023114.1-P | Field mustard | nucleus | 53.25 | 56.96 |
| CDY46773 | Canola | nucleus | 52.96 | 56.65 |
| PGSC0003DMT400061471 | Potato | nucleus | 52.66 | 56.51 |
| Zm00001d037543_P001 | Maize | nucleus | 26.04 | 48.89 |
| KRH42195 | Soybean | endoplasmic reticulum | 38.76 | 47.64 |
| Zm00001d035551_P007 | Maize | nucleus | 48.22 | 41.58 |
| KRH58317 | Soybean | nucleus | 26.92 | 41.55 |
| Zm00001d047498_P003 | Maize | nucleus | 27.22 | 32.28 |
| Zm00001d040672_P013 | Maize | nucleus | 27.22 | 31.4 |
| Zm00001d041673_P001 | Maize | cytosol | 8.88 | 26.32 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 25.15 | 24.57 |
| Zm00001d009821_P001 | Maize | plastid | 15.09 | 16.04 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A1D6FVH3 | ProteinID:AQK95438.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF25 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0008424F21 | EnsemblPlantsGene:Zm00001d011004 | EnsemblPlants:Zm00001d011004_P008 | EnsemblPlants:Zm00001d011004_T008 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
Serine/arginine-rich splicing factor RS2Z32
Coordinates
chr8:-:136501289..136503874
Molecular Weight (calculated)
38088.0 Da
IEP (calculated)
10.952
GRAVY (calculated)
-1.352
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRNDDRYGN TRLYVGRLSP RTRSRDLEYL FSKYGRIREV ELKRDYAFIE FSDPRDADDA QYNLDGRDVD GSRIIVEFAK GVPRGSGGSR DYNGRGPPPG
101: TGRCFNCGVD GHWARDCQAG DWKNKCYRCG ERGHIERNCQ NSPRNLRRER SYSRSPSPRR GRGRSRSYSR SRSYSRSRSP SGSPRGGRRD RDERRSRSLS
201: YSRSASPRRS VSPVKEKERS RTPDGSRSPS PRDKVSPPPK DNGAHNGSDR EDSPGGREMS KRSRSPSDGY RSPVGNGRSP SRATMVTTQA PRATMVMTST
301: AVHQEEVSPP ELKNSPCNLG SSVPDLRKQT VFCHFSDL
101: TGRCFNCGVD GHWARDCQAG DWKNKCYRCG ERGHIERNCQ NSPRNLRRER SYSRSPSPRR GRGRSRSYSR SRSYSRSRSP SGSPRGGRRD RDERRSRSLS
201: YSRSASPRRS VSPVKEKERS RTPDGSRSPS PRDKVSPPPK DNGAHNGSDR EDSPGGREMS KRSRSPSDGY RSPVGNGRSP SRATMVTTQA PRATMVMTST
301: AVHQEEVSPP ELKNSPCNLG SSVPDLRKQT VFCHFSDL
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.