Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39307 | Sorghum | nucleus | 84.9 | 86.31 |
| Os03t0363800-01 | Rice | nucleus | 72.24 | 72.84 |
| TraesCS4D01G162900.1 | Wheat | nucleus | 70.2 | 72.27 |
| TraesCS4B01G156200.1 | Wheat | nucleus | 68.98 | 70.71 |
| HORVU4Hr1G045510.3 | Barley | nucleus | 66.94 | 68.62 |
| TraesCS4A01G141800.2 | Wheat | nucleus | 69.8 | 68.4 |
| Solyc01g080660.2.1 | Tomato | nucleus | 40.0 | 59.04 |
| AT5G18810.1 | Thale cress | nucleus | 47.76 | 49.58 |
| KRH50944 | Soybean | nucleus | 48.98 | 49.38 |
| KRH02172 | Soybean | nucleus | 50.2 | 49.2 |
| Zm00001d029629_P001 | Maize | nucleus | 8.98 | 48.89 |
| PGSC0003DMT400016115 | Potato | nucleus | 48.57 | 44.74 |
| VIT_14s0030g00480.t01 | Wine grape | nucleus | 52.24 | 44.6 |
| Zm00001d022243_P002 | Maize | nucleus | 33.88 | 39.71 |
| Zm00001d019443_P002 | Maize | nucleus | 16.73 | 38.68 |
| Zm00001d047401_P001 | Maize | nucleus | 33.88 | 38.43 |
| Zm00001d004470_P001 | Maize | nucleus | 17.14 | 37.84 |
| Zm00001d005285_P001 | Maize | nucleus | 19.59 | 33.57 |
| Zm00001d029305_P001 | Maize | nucleus | 22.04 | 32.93 |
| Zm00001d016504_P001 | Maize | nucleus | 9.8 | 32.0 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 35.92 | 30.56 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 27.35 | 30.32 |
| Zm00001d004722_P001 | Maize | cytosol | 12.65 | 29.25 |
| Zm00001d010881_P001 | Maize | nucleus | 21.63 | 28.96 |
| Zm00001d005739_P004 | Maize | cytosol | 12.24 | 27.27 |
| Zm00001d012570_P002 | Maize | extracellular | 17.55 | 26.38 |
| Zm00001d010176_P001 | Maize | cytosol | 12.24 | 26.32 |
| Zm00001d043759_P001 | Maize | cytosol | 15.92 | 25.32 |
| Zm00001d015189_P001 | Maize | nucleus | 17.14 | 23.86 |
| Zm00001d006906_P010 | Maize | mitochondrion | 23.27 | 22.62 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 19.59 | 22.22 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 33.06 | 21.95 |
| Zm00001d022189_P002 | Maize | nucleus | 22.45 | 21.65 |
| Zm00001d052803_P004 | Maize | nucleus | 22.04 | 17.94 |
| Zm00001d031269_P002 | Maize | nucleus | 22.04 | 15.7 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 14.29 | 8.1 |
Protein Annotations
| EntrezGene:100272550 | MapMan:16.4.6.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6K3W5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0016607 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONL98323.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000843A737 | EnsemblPlantsGene:Zm00001d029256 | EnsemblPlants:Zm00001d029256_P002 | EnsemblPlants:Zm00001d029256_T002 |
| SEG:seg | : | : | : | : | : |
Description
Serine/arginine-rich SC35-like splicing factor SCL28
Coordinates
chr1:+:63867544..63872550
Molecular Weight (calculated)
28422.3 Da
IEP (calculated)
11.754
GRAVY (calculated)
-1.362
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGYRSRSPS RSYSPRRRYS RSPPRRKRYD DPRDRYRWAG AGGGGDRRGY GRPLAQSGLL IRNISLTARP EDIRATFEQF GPIKDVYLPR NFHTRELRGF
101: GFVKFRYPED AAVAKREMHH QVIGGREISI VYAEENRKTP QEMRMRTRTS GRYMDERYTR LSRSPRSRSH SYSPPPSPVR RDFRGRERPD SYSPQYSHSP
201: RPRDSRHHRS DGRSPTPSLD DHKPKATPVN GGHGPAVASR SITQP
101: GFVKFRYPED AAVAKREMHH QVIGGREISI VYAEENRKTP QEMRMRTRTS GRYMDERYTR LSRSPRSRSH SYSPPPSPVR RDFRGRERPD SYSPQYSHSP
201: RPRDSRHHRS DGRSPTPSLD DHKPKATPVN GGHGPAVASR SITQP
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLSR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLSR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.