Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018581.1-P | Field mustard | cytosol | 60.53 | 29.74 |
| CDY66028 | Canola | cytosol | 60.53 | 27.27 |
| Zm00001d040672_P013 | Maize | nucleus | 69.3 | 26.96 |
| Zm00001d009821_P001 | Maize | plastid | 71.05 | 25.47 |
| Solyc01g099810.2.1 | Tomato | nucleus | 58.77 | 25.38 |
| AT1G09140.1 | Thale cress | cytosol | 59.65 | 25.37 |
| KRG92904 | Soybean | nucleus | 58.77 | 24.28 |
| Zm00001d047498_P003 | Maize | nucleus | 60.53 | 24.21 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 60.53 | 23.96 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 57.89 | 22.6 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 59.65 | 22.08 |
| Bra018550.1-P | Field mustard | nucleus | 50.0 | 21.84 |
| CDX95008 | Canola | nucleus | 60.53 | 21.77 |
| AT4G02430.4 | Thale cress | nucleus | 55.26 | 21.58 |
| CDX91319 | Canola | nucleus | 56.14 | 21.4 |
| KRH68188 | Soybean | nucleus | 56.14 | 21.4 |
| Solyc09g075090.1.1 | Tomato | nucleus | 56.14 | 20.98 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 63.16 | 20.81 |
| AT1G02840.1 | Thale cress | nucleus | 55.26 | 20.79 |
| KRG96443 | Soybean | nucleus | 57.02 | 20.77 |
| CDX97264 | Canola | nucleus | 55.26 | 20.66 |
| CDY50385 | Canola | nucleus | 55.26 | 20.45 |
| CDY22050 | Canola | nucleus | 55.26 | 20.39 |
| PGSC0003DMT400029666 | Potato | nucleus | 56.14 | 20.32 |
| Bra036267.1-P | Field mustard | nucleus | 55.26 | 20.19 |
| PGSC0003DMT400063701 | Potato | nucleus | 57.89 | 20.0 |
| Zm00001d037543_P001 | Maize | nucleus | 20.18 | 12.78 |
| Solyc06g009060.2.1 | Tomato | nucleus | 24.56 | 10.69 |
| Zm00001d011004_P008 | Maize | nucleus | 26.32 | 8.88 |
| Zm00001d011005_P005 | Maize | nucleus | 24.56 | 7.93 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 23.68 | 7.28 |
| Zm00001d035551_P007 | Maize | nucleus | 22.81 | 6.63 |
Protein Annotations
| EnsemblPlants:Zm00001d041673_P001 | EnsemblPlants:Zm00001d041673_T001 | EnsemblPlantsGene:Zm00001d041673 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:ONM33460.1 |
| SUPFAM:SSF54928 | UniParc:UPI0008429F54 | UniProt:A0A1D6MXK8 | MapMan:16.4.6.1 | : | : |
Description
Serine/arginine-rich-splicing factor SR34
Coordinates
chr3:-:132900714..132901533
Molecular Weight (calculated)
13092.6 Da
IEP (calculated)
4.879
GRAVY (calculated)
-0.131
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVQYGRILD IDLKIPLRPP GYAFDEFEDP HDADDAIYGR DGYSFDGYRL RVCISCFHLM VLLEERIEAL KFHLLNHAVM VTSLPSSASW QDLKDHMRRA
101: GDVCFSDVYH EVGG
101: GDVCFSDVYH EVGG
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.