Factsheet for Zm00001d019041_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d030739_P002
Zm00001d033511_P002
Zm00001d048609_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Zm00001d030739_P002	AT3G55460.1	21798944
AT5G04280.1	Zm00001d048609_P001	AT3G55460.1	21798944
AT5G04280.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G04280.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88590	Sorghum	nucleus	96.93	94.35
TraesCS2D01G238900.1	Wheat	nucleus	79.52	79.52
TraesCS2B01G259400.1	Wheat	nucleus	79.18	79.18
TraesCS2A01G237400.1	Wheat	nucleus	79.18	79.18
Zm00001d007799_P001	Maize	mitochondrion, plastid	89.08	67.97
GSMUA_Achr4P22370_001	Banana	nucleus	62.8	59.16
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	59.73	58.92
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	59.39	55.95
GSMUA_Achr2P12550_001	Banana	nucleus	41.98	54.91
VIT_13s0019g05080.t01	Wine grape	nucleus	51.54	54.32
KRG90774	Soybean	nucleus	48.46	50.9
PGSC0003DMT400043581	Potato	nucleus	46.08	49.82
VIT_08s0007g04870.t01	Wine grape	cytosol	40.61	47.98
Zm00001d041246_P001	Maize	nucleus	22.53	45.52
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	24.57	45.28
Zm00001d031168_P001	Maize	plastid	23.89	45.16
KRH35987	Soybean	nucleus	44.37	44.98
AT1G60650.2	Thale cress	nucleus	44.71	44.86
Zm00001d034768_P005	Maize	nucleus	31.06	44.39
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	51.88	44.06
Bra005798.1-P	Field mustard	nucleus	45.73	43.79
CDY11283	Canola	nucleus	45.73	43.79
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	45.73	43.23
Solyc03g071560.2.1	Tomato	nucleus	46.08	42.99
CDX80910	Canola	nucleus	37.2	41.76
CDY34132	Canola	nucleus	36.18	41.57
PGSC0003DMT400079815	Potato	nucleus	44.37	40.88
Solyc11g008210.1.1	Tomato	nucleus	39.25	38.98
Zm00001d012052_P001	Maize	mitochondrion, plastid	18.43	34.62
Zm00001d024675_P001	Maize	mitochondrion	13.31	27.86
Zm00001d041949_P001	Maize	mitochondrion	10.24	27.78
Zm00001d041750_P001	Maize	mitochondrion	23.21	26.05
Zm00001d006566_P002	Maize	mitochondrion	9.9	25.22
Zm00001d023734_P003	Maize	nucleus, plastid	23.89	24.39
Zm00001d022065_P001	Maize	mitochondrion	24.57	23.38
Zm00001d028661_P001	Maize	plastid	12.63	22.29
Zm00001d026016_P002	Maize	plastid	10.92	21.33
Zm00001d017930_P003	Maize	plastid	10.58	7.54

Protein Annotations

EntrezGene:100285313	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:B6U3A0	EMBL:BT064695
EMBL:EU971715	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM52021.1	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000182E6E4
EnsemblPlantsGene:Zm00001d019041	EnsemblPlants:Zm00001d019041_P001	EnsemblPlants:Zm00001d019041_T001	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

Glycine-rich RNA-binding protein RZ1C

Coordinates

chr7:-:13885254..13888500

Molecular Weight (calculated)

31478.4 Da

IEP (calculated)

9.512

GRAVY (calculated)

-1.135

Length

293 amino acids

Sequence
(BLAST)

001: MAEEKVGRIF VGGLSWNTTE RTLERTFGQY GKVIEAQVVV ERETGRSRGF GFVTFSEPRA VDAAIRGMHN GELDGRNISV NKAEPRNSDG YGYGGGGGGG
101: YSSGGRGGYR SGADVVPAAS DDCFKCGRPG HWARECPYSD GSGRTGRYSP GSRYGGGTGG RGDRFGGSDR FARYDDDRYD GGRYVDSRDT YYGSGRDRYA
201: PAAERYSGDR YSGADRYASS GFARERSYER DGGRSNGGYY RDEPRGTGGY GRGGSRGGGG GGPARFGGSY RDRPAPYDRP SRGGAARAYD DRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.