Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400043581 | |
| PGSC0003DMT400079815 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04280.1 | PGSC0003DMT400043581 | AT5G04280.1 | 21798944 |
| AT5G04280.1 | PGSC0003DMT400079815 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g071560.2.1 | Tomato | nucleus | 94.1 | 81.21 |
| VIT_13s0019g05080.t01 | Wine grape | nucleus | 71.22 | 69.42 |
| KRG90774 | Soybean | nucleus | 67.16 | 65.23 |
| PGSC0003DMT400079815 | Potato | nucleus | 75.28 | 64.15 |
| KRH35987 | Soybean | nucleus | 59.04 | 55.36 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 45.02 | 54.46 |
| Bra005798.1-P | Field mustard | nucleus | 60.52 | 53.59 |
| CDY11283 | Canola | nucleus | 60.52 | 53.59 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 60.89 | 53.05 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 60.15 | 52.58 |
| CDX80910 | Canola | nucleus | 49.82 | 51.72 |
| AT1G60650.2 | Thale cress | nucleus | 54.61 | 50.68 |
| Zm00001d033511_P002 | Maize | cytosol, mitochondrion, nucleus | 55.35 | 50.51 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 53.51 | 49.49 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 53.14 | 49.15 |
| TraesCS2B01G259400.1 | Wheat | nucleus | 52.77 | 48.81 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 57.2 | 48.74 |
| KXG37841 | Sorghum | nucleus | 56.83 | 48.73 |
| TraesCS4B01G026400.1 | Wheat | nucleus | 56.83 | 48.28 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 56.46 | 48.27 |
| CDY34132 | Canola | nucleus | 45.39 | 48.24 |
| Os03t0681900-01 | Rice | nucleus | 54.61 | 48.05 |
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 54.98 | 47.91 |
| OQU88590 | Sorghum | nucleus | 52.4 | 47.18 |
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 49.82 | 46.08 |
| PGSC0003DMT400084266 | Potato | extracellular | 25.83 | 43.48 |
| PGSC0003DMT400076497 | Potato | nucleus | 32.47 | 42.93 |
| PGSC0003DMT400001879 | Potato | cytosol | 27.68 | 42.61 |
| PGSC0003DMT400084290 | Potato | nucleus | 25.46 | 41.57 |
| PGSC0003DMT400084258 | Potato | nucleus | 25.46 | 41.57 |
| PGSC0003DMT400083014 | Potato | nucleus | 25.46 | 41.57 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 52.4 | 41.16 |
| PGSC0003DMT400045627 | Potato | nucleus | 31.73 | 40.19 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 49.82 | 35.16 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 18.08 | 33.79 |
| PGSC0003DMT400001786 | Potato | nucleus | 7.75 | 30.0 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 15.87 | 28.29 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 12.92 | 27.13 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 25.09 | 25.86 |
| PGSC0003DMT400028726 | Potato | nucleus | 12.92 | 23.97 |
| PGSC0003DMT400049607 | Potato | plastid | 13.65 | 23.57 |
| PGSC0003DMT400003685 | Potato | nucleus | 25.09 | 22.44 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 19.19 | 20.72 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 10.7 | 19.46 |
| PGSC0003DMT400022733 | Potato | plastid | 11.44 | 19.02 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 10.33 | 18.92 |
| PGSC0003DMT400050134 | Potato | plastid | 10.7 | 7.25 |
Protein Annotations
| EntrezGene:102601577 | MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 |
| UniProt:M1BEW5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | EnsemblPlantsGene:PGSC0003DMG400016922 | PGSC:PGSC0003DMG400016922 |
| EnsemblPlants:PGSC0003DMT400043581 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR44993 | PANTHER:PTHR44993:SF1 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000294DFF3 |
| RefSeq:XP_006364446.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
Glycine-rich RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016922]
Coordinates
chr3:+:16833748..16841782
Molecular Weight (calculated)
30400.7 Da
IEP (calculated)
8.525
GRAVY (calculated)
-1.249
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKVQDYRI FVGGLSWDVT ERQLEDAFSP FGKIVDCQVM LDRDTGRPRG FGFLTFADRR AMEDAIREMD GAEVGDRVIS VNKAQPKMGS EDPDHGYGGG
101: YVSGGRASYV GGNRSVGQDT CFSCGRPGHW ARDCPLEGGG RGARPLTPPP RSRYGGARGD RFGSDHDRYM DDRYDRGNHA DRERYDSRYE SRDRYTSDRY
201: PPGGDRLGNR YGGSDRYPQN GYGKERGFDR DVGDRYEAGG PARYEGRNYR DRAGPYDRPR RGGGPPSFDR Y
101: YVSGGRASYV GGNRSVGQDT CFSCGRPGHW ARDCPLEGGG RGARPLTPPP RSRYGGARGD RFGSDHDRYM DDRYDRGNHA DRERYDSRYE SRDRYTSDRY
201: PPGGDRLGNR YGGSDRYPQN GYGKERGFDR DVGDRYEAGG PARYEGRNYR DRAGPYDRPR RGGGPPSFDR Y
001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW
Arabidopsis Description
RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.