Factsheet for AT1G60650.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34132	Canola	nucleus	63.7	72.94
KRG90774	Soybean	nucleus	58.56	61.29
VIT_13s0019g05080.t01	Wine grape	nucleus	57.53	60.43
PGSC0003DMT400043581	Potato	nucleus	50.68	54.61
GSMUA_Achr2P12550_001	Banana	nucleus	40.75	53.12
KRH35987	Soybean	nucleus	51.37	51.9
GSMUA_Achr4P22370_001	Banana	nucleus	51.37	48.23
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	50.68	47.74
Solyc03g071560.2.1	Tomato	nucleus	50.0	46.5
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	46.58	45.79
Zm00001d019041_P001	Maize	extracellular, plasma membrane	44.86	44.71
OQU88590	Sorghum	nucleus	45.55	44.19
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	46.92	44.05
TraesCS2D01G238900.1	Wheat	nucleus	44.18	44.03
PGSC0003DMT400079815	Potato	nucleus	47.95	44.03
TraesCS2A01G237400.1	Wheat	nucleus	43.84	43.69
TraesCS2B01G259400.1	Wheat	nucleus	43.84	43.69
KXG37841	Sorghum	nucleus	46.92	43.35
Os03t0681900-01	Rice	nucleus	44.86	42.53
TraesCS4D01G023800.2	Wheat	nucleus	45.21	41.51
TraesCS4B01G026400.1	Wheat	nucleus	45.21	41.38
Solyc11g008210.1.1	Tomato	nucleus	41.78	41.36
TraesCS4A01G288500.1	Wheat	nucleus	44.86	41.32
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	44.86	37.97
AT3G26420.1	Thale cress	nucleus	28.42	33.88
Zm00001d007799_P001	Maize	mitochondrion, plastid	43.84	33.33
AT4G39260.1	Thale cress	nucleus	19.18	33.14
AT2G21660.1	Thale cress	nucleus	19.86	32.95
AT4G13860.1	Thale cress	cytosol	8.9	29.89
AT3G23830.1	Thale cress	mitochondrion, plastid	13.36	28.68
AT3G46020.1	Thale cress	mitochondrion	9.25	26.47
AT1G18630.1	Thale cress	mitochondrion	14.04	26.45
AT4G13850.1	Thale cress	mitochondrion	14.04	25.95
AT5G59865.1	Thale cress	mitochondrion, plastid	8.56	22.12
AT5G06210.1	Thale cress	mitochondrion	10.62	21.23
AT3G08000.1	Thale cress	plastid	9.59	19.58
AT2G27330.1	Thale cress	mitochondrion	7.19	18.1
AT2G37510.2	Thale cress	mitochondrion, plastid	10.27	17.96
AT5G61030.1	Thale cress	mitochondrion	18.84	17.8
AT1G74230.1	Thale cress	mitochondrion, plastid	17.47	17.65
AT5G54580.1	Thale cress	mitochondrion, plastid	8.56	16.03
AT1G73530.1	Thale cress	plastid	9.59	15.47
AT5G59860.1	Thale cress	nucleus	7.88	14.65
AT3G20930.2	Thale cress	plastid	8.56	6.6

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:842359	UniProt:A0A178WIQ3	ProteinID:AAB71977.1
ProteinID:AEE33714.1	ProteinID:AEE33715.1	EMBL:AK221863	ArrayExpress:AT1G60650	EnsemblPlantsGene:AT1G60650	RefSeq:AT1G60650
TAIR:AT1G60650	RefSeq:AT1G60650-TAIR-G	EnsemblPlants:AT1G60650.2	TAIR:AT1G60650.2	EMBL:AY088195	Unigene:At.26558
EMBL:BT002328	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009409
GO:GO:0009414	GO:GO:0009628	GO:GO:0009987	GO:GO:0016607	GO:GO:0045892	GO:GO:0046872
GO:GO:0048026	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	RefSeq:NP_564759.1	RefSeq:NP_849832.1
InterPro:Nucleotide-bd_a/b_plait_sf	UniProt:O22703	ProteinID:OAP18258.1	PFAM:PF00076	PFAM:PF00098	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007098	PO:PO:0007115
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00000AC630
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]

Coordinates

chr1:+:22339887..22342337

Molecular Weight (calculated)

34399.5 Da

IEP (calculated)

8.537

GRAVY (calculated)

-1.535

Length

292 amino acids

Sequence
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.