Factsheet for Zm00001d033511_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d030739_P002
Zm00001d033511_P002
Zm00001d048609_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Zm00001d030739_P002	AT3G55460.1	21798944
AT5G04280.1	Zm00001d048609_P001	AT3G55460.1	21798944
AT5G04280.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G04280.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	88.89	84.89
Os03t0681900-01	Rice	nucleus	82.15	79.22
TraesCS4D01G023800.2	Wheat	nucleus	80.81	75.47
TraesCS4B01G026400.1	Wheat	nucleus	80.81	75.24
TraesCS4A01G288500.1	Wheat	nucleus	80.13	75.08
GSMUA_Achr4P22370_001	Banana	nucleus	68.69	65.59
GSMUA_Achr2P12550_001	Banana	nucleus	45.45	60.27
Zm00001d019041_P001	Maize	extracellular, plasma membrane	58.92	59.73
VIT_13s0019g05080.t01	Wine grape	nucleus	55.22	58.99
KRG90774	Soybean	nucleus	54.88	58.42
PGSC0003DMT400043581	Potato	nucleus	50.51	55.35
VIT_08s0007g04870.t01	Wine grape	cytosol	42.09	50.4
KRH35987	Soybean	nucleus	48.48	49.83
CDY11283	Canola	nucleus	49.83	48.37
Bra005798.1-P	Field mustard	nucleus	49.83	48.37
Solyc03g071560.2.1	Tomato	nucleus	50.84	48.09
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	54.21	46.67
AT1G60650.2	Thale cress	nucleus	45.79	46.58
CDX80910	Canola	nucleus	40.74	46.36
Zm00001d041246_P001	Maize	nucleus	22.56	46.21
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	48.15	46.13
Zm00001d031168_P001	Maize	plastid	23.57	45.16
CDY34132	Canola	nucleus	38.72	45.1
Zm00001d007799_P001	Maize	mitochondrion, plastid	57.91	44.79
PGSC0003DMT400079815	Potato	nucleus	47.81	44.65
Solyc11g008210.1.1	Tomato	nucleus	42.42	42.71
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	22.56	42.14
Zm00001d034768_P005	Maize	nucleus	26.6	38.54
Zm00001d012052_P001	Maize	mitochondrion, plastid	18.52	35.26
Zm00001d041750_P001	Maize	mitochondrion	22.9	26.05
Zm00001d041949_P001	Maize	mitochondrion	8.75	24.07
Zm00001d022065_P001	Maize	mitochondrion	24.92	24.03
Zm00001d006566_P002	Maize	mitochondrion	9.09	23.48
Zm00001d023734_P003	Maize	nucleus, plastid	22.56	23.34
Zm00001d024675_P001	Maize	mitochondrion	10.77	22.86
Zm00001d028661_P001	Maize	plastid	12.12	21.69
Zm00001d026016_P002	Maize	plastid	10.1	20.0
Zm00001d017930_P003	Maize	plastid	11.78	8.52

Protein Annotations

EntrezGene:100381912	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:BT062575	UniProt:C0P2Q6
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM07743.1	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0001948D67	EnsemblPlantsGene:Zm00001d033511
EnsemblPlants:Zm00001d033511_P002	EnsemblPlants:Zm00001d033511_T002	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

Glycine-rich RNA-binding protein RZ1C

Coordinates

chr1:-:265211893..265215971

Molecular Weight (calculated)

32444.7 Da

IEP (calculated)

8.951

GRAVY (calculated)

-1.324

Length

297 amino acids

Sequence
(BLAST)

001: MEGKEEGRIF VGGLSWQTDE RKLEDAFGRF GKVVDAQIMV ERHTNRHRGF GFVTFEDRRA VDSAIKEMHG QEIDGRTISV NKAEPKMNTD DTRYAGGGGR
101: GEYRGGRGDG PPPGNCFECG RPGHWVRDCP SAAGGRSGRF PSKFSGGSGV GRGDRFSGSD RFGDRYMDDR YDGGRYGYRD QADARDRYAG GRDRYANDRY
201: PSGGDHFGGD RYGGGPDCYV PSGYGRERER SYERDGVRGG GGGGGGYDRS GPRGGGGYDR DGPRGGGGSA RYDGGNYRER PGPYDRPSRG GRFDDRY

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.